NAU_TM43416, NAU_TM43416 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM43416
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM43416
TypeSNP
SNP AllelesC/A
5' Flanking SequenceAAAGCATTAAAAAAACTTCAAAATAATAATAATGAAAATATGCTTGCTAATCCGAGATTC
3' Flanking SequenceTCTGATGCCATCCCTGAATCTTAGTTTTATGCATTACCTGATAGGAAAAGAAAGGGGAAG
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018214.1chromosomeCM018214.1:5232383..5232503 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:4978513..4978634 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr13chromosomeAt_chr13:91222689..91222809 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:5098807..5098927 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:5300191..5300311 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:5264851..5264971 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:5250270..5250390 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:5327104..5327224 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A13chromosomeGbar_A13:5339691..5339811 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:5195034..5195154 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:5457550..5457670 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:5492607..5492727 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:5099753..5099873 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:5599979..5600099 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:7539474..7539595 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch13_At.13N/A13.6TM43416View
Sequence
>NAU_TM43416 ID=NAU_TM43416; Name=NAU_TM43416; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
AAAGCATTAAAAAAACTTCAAAATAATAATAATGAAAATATGCTTGCTAA
TCCGAGATTC[A/C]TCTGATGCCATCCCTGAATCTTAGTTTTATGCATT
ACCTGATAGGAAAAGAAAGGGGAAG