NAU_TM39624, NAU_TM39624 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM39624
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM39624
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGATTGATTGAAAAGACCAAGATACTGGCTGGGAAGAGCTCCAGGAATTCTATTATTAGGC
3' Flanking SequenceAGATTAAAAAGGCTAATCCATGGCCAGACAAAGTAGGGTATTCCTCCGGTACAATTGCAA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:110004664..110004784 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:5021736..5021856 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr1chromosomeAt_chr1:3581179..3581299 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:89068606..89068726 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:119069983..119070103 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:117411712..117411832 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:115286001..115286121 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:111992066..111992186 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:109036128..109036248 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:112309212..112309332 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:116237970..116238090 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:121953550..121953670 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:109947150..109947270 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:119205311..119205431 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:126287962..126288082 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch11_At.11N/A176.8TM39624View
Sequence
>NAU_TM39624 ID=NAU_TM39624; Name=NAU_TM39624; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
GATTGATTGAAAAGACCAAGATACTGGCTGGGAAGAGCTCCAGGAATTCT
ATTATTAGGC[A/G]AGATTAAAAAGGCTAATCCATGGCCAGACAAAGTA
GGGTATTCCTCCGGTACAATTGCAA