NAU_TM39407, NAU_TM39407 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM39407
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM39407
TypeSNP
SNP AllelesG/A
5' Flanking SequenceGGGGATAAAAACTGTCTCTAAACCTGGGTTTGCGTATCATCTCCACTGACAATATTTCCA
3' Flanking SequenceCTATTCGAAGAGCAGGAGTTATCAACGAAGCTGATGGGTGCCTATGAAAGCCAAAGAATT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:103244266..103244386 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:13643225..13643345 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016624.1chromosomeCM016624.1:129300105..129300225 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold4642.1supercontigscaffold4642.1:26084..26204 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:83212923..83213043 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:112320467..112320587 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:110841855..110841975 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:108385120..108385240 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:105160543..105160663 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:101665088..101665208 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:104848511..104848631 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:108696792..108696912 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:115266380..115266500 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:103757585..103757705 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:113075003..113075123 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:116963675..116963795 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:115425966..115426086 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch11_At.11N/A149.5TM39407View
Sequence
>NAU_TM39407 ID=NAU_TM39407; Name=NAU_TM39407; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
GGGGATAAAAACTGTCTCTAAACCTGGGTTTGCGTATCATCTCCACTGAC
AATATTTCCA[A/G]CTATTCGAAGAGCAGGAGTTATCAACGAAGCTGAT
GGGTGCCTATGAAAGCCAAAGAATT