NAU_TM39348, NAU_TM39348 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM39348
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM39348
TypeSNP
SNP AllelesT/G
5' Flanking SequenceATAAATCAAAGTCACTTTCTTACTGTGTTCAACTTCTCTTACAAAGTGATAACTTATCTT
3' Flanking SequenceAAGTGCTTTGTCCTCCCATGAAAAACGAGATTCTTTATAATTGCAATAGTGGATTGATTG
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:102071457..102071577 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:14923172..14923292 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr1chromosomeAt_chr1:7981012..7981132 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:82042064..82042184 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:111123329..111123449 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:109746697..109746817 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:107186756..107186876 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:104005579..104005699 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:100492628..100492748 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:103720741..103720861 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:107526872..107526992 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:114056490..114056610 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:102597324..102597444 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:111932087..111932207 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:112596903..112597023 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:114158306..114158426 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch11_At.11N/A145.4TM39348View
Sequence
>NAU_TM39348 ID=NAU_TM39348; Name=NAU_TM39348; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
ATAAATCAAAGTCACTTTCTTACTGTGTTCAACTTCTCTTACAAAGTGAT
AACTTATCTT[G/T]AAGTGCTTTGTCCTCCCATGAAAAACGAGATTCTT
TATAATTGCAATAGTGGATTGATTG