NAU_TM39344, NAU_TM39344 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM39344
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM39344
TypeSNP
SNP AllelesC/T
5' Flanking SequenceTTGATAAACGGGATTTACTCCCATTGTTATCTAATCCCATGATTCCCGCCTGATTTGAAG
3' Flanking SequenceTTGATTACTCTCCCAATTCCCCTGTCGCGAATGCCACTGGACTGACTGCCCTCGGTCTCT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:101925311..101925431 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:15067931..15068051 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr1chromosomeAt_chr1:7843089..7843209 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:81900747..81900867 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:110985336..110985456 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:109610352..109610472 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:107048661..107048781 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:103867434..103867554 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:100346496..100346616 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:103585335..103585455 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:107384243..107384363 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:113901853..113901973 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:102464616..102464736 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:111793948..111794068 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:112736088..112736208 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:114013507..114013627 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F11chromosomeF11:86797209..86797328 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:16853272..16853391 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch11_At.11N/A144.5TM39344View
Sequence
>NAU_TM39344 ID=NAU_TM39344; Name=NAU_TM39344; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TTGATAAACGGGATTTACTCCCATTGTTATCTAATCCCATGATTCCCGCC
TGATTTGAAG[C/T]TTGATTACTCTCCCAATTCCCCTGTCGCGAATGCC
ACTGGACTGACTGCCCTCGGTCTCT