NAU_TM33080, NAU_TM33080 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM33080
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM33080
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGTGATTTCGTTACATGCCCTTATTGGTTTACAGAGTCATAATACTATATGAGTGGCCACT
3' Flanking SequenceGATTGGGGTCTATTTGGGAAATCATTTTGTTCGACTCAGGTAGCACACATAACTTCATCG
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018210.1chromosomeCM018210.1:61783534..61783654 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:68481207..68481327 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr6chromosomeAt_chr6:49148195..49148315 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:61246720..61246840 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:65910554..65910674 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:67758847..67758967 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:67667265..67667385 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:64558685..64558805 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A09chromosomeGbar_A09:62235899..62236019 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:63710143..63710263 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:63466807..63466927 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:66381975..66382093 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:63623219..63623339 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:68993412..68993532 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:67679734..67679854 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:70964753..70964873 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch09_At.09N/A96.6TM33080View
2LMY28 x XLZ24, RIL (2018)AD_ch09_At.09N/A31.8TM33080View
Sequence
>NAU_TM33080 ID=NAU_TM33080; Name=NAU_TM33080; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
GTGATTTCGTTACATGCCCTTATTGGTTTACAGAGTCATAATACTATATG
AGTGGCCACT[C/T]GATTGGGGTCTATTTGGGAAATCATTTTGTTCGAC
TCAGGTAGCACACATAACTTCATCG