NAU_TM29872, NAU_TM29872 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM29872
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM29872
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGAGTCGACAAGTCCTTGGCTCCATCGCCTAAGTCCTTTGCCGCTTCGACGGTGGCAAAGA
3' Flanking SequenceACGACGGGATGTCCAAAAAAATGCCTGAGCAATGATTGATGAAGATGATAAATCCCACAG
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:63383493..63383613 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:126884205..126884325 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:2005647..2005767 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:3139966..3140086 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold246.1supercontigscaffold246.1:1131939..1132059 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:101133445..101133565 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:120121756..120121876 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:122683597..122683717 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:123013547..123013667 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:118706790..118706910 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:63516848..63516968 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:117275454..117275574 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:65251905..65252025 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:118224974..118225094 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:65064220..65064340 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:116792416..116792536 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:126557789..126557909 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:63776786..63776906 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:117516833..117516953 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:124949980..124950100 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:129441425..129441545 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:130305438..130305558 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:64115084..64115204 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch08_At.08N/A133.6TM29872View
Sequence
>NAU_TM29872 ID=NAU_TM29872; Name=NAU_TM29872; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
GAGTCGACAAGTCCTTGGCTCCATCGCCTAAGTCCTTTGCCGCTTCGACG
GTGGCAAAGA[A/G]ACGACGGGATGTCCAAAAAAATGCCTGAGCAATGA
TTGATGAAGATGATAAATCCCACAG