NAU_TM28196, NAU_TM28196 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM28196
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM28196
TypeSNP
SNP AllelesT/G
5' Flanking SequenceATGAAACATCGTAAAAGAAATCGAATACAATAGTATTAATCACATCTGATGCTTGTTCGC
3' Flanking SequenceCTAATCATATCCATTTGTGTCAGGTTACTTGTCTGGGCTAAACTTTTTAAATGACATCAA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018209.1chromosomeCM018209.1:83759730..83759850 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:91700621..91700741 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr4chromosomeAt_chr4:68880067..68880187 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:69489411..69489531 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:87431862..87431982 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:90633664..90633784 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:90091545..90091665 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:87303280..87303400 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A08chromosomeGbar_A08:84571573..84571693 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:85670901..85671021 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017643.1chromosomeCM017643.1:93689795..93689915 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:85112418..85112538 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:91573992..91574112 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:95249876..95249996 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:95719054..95719174 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch08_At.08N/A42.3TM28196View
2LMY28 x XLZ24, RIL (2018)AD_ch08_At.08N/A16.34TM28196View
Sequence
>NAU_TM28196 ID=NAU_TM28196; Name=NAU_TM28196; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
ATGAAACATCGTAAAAGAAATCGAATACAATAGTATTAATCACATCTGAT
GCTTGTTCGC[G/T]CTAATCATATCCATTTGTGTCAGGTTACTTGTCTG
GGCTAAACTTTTTAAATGACATCAA