NAU_TM21825, NAU_TM21825 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM21825
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM21825
TypeSNP
SNP AllelesA/G
5' Flanking SequenceCAGGATCAACAACTACTACAGAGAGAGGGGGAGAGGGGTTGATTTGTGAACGGCTTCGGG
3' Flanking SequenceAATCTAAACTTATCTGATTTAATCATCATCGGCACCGGAAGTTTTGGAGGTTCCGGTTTT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018209.1chromosomeCM018209.1:2169177..2169297 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:2707720..2707840 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold72.1supercontigscaffold72.1:884368..884488 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:1728596..1728716 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:2523378..2523498 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:2299112..2299232 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:2514905..2515025 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:2120513..2120633 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A08chromosomeGbar_A08:2413289..2413409 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:2283330..2283450 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:2300482..2300602 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:2419202..2419322 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:2375876..2375996 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:2567208..2567328 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:2659501..2659621 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:2570993..2571113 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
E08chromosomeE08:3489320..3489439 +Gossypium stocksii (E1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch08_At.08N/A11.5TM21825View
2LMY28 x XLZ24, RIL (2018)AD_ch08_At.08N/A140.82TM21825View
Sequence
>NAU_TM21825 ID=NAU_TM21825; Name=NAU_TM21825; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
CAGGATCAACAACTACTACAGAGAGAGGGGGAGAGGGGTTGATTTGTGAA
CGGCTTCGGG[A/G]AATCTAAACTTATCTGATTTAATCATCATCGGCAC
CGGAAGTTTTGGAGGTTCCGGTTTT