NAU_TM19875, NAU_TM19875 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM19875
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM19875
TypeSNP
SNP AllelesT/A
5' Flanking SequenceGTGTGTCGTTCTCAAGCCGTCGACGGATGCCATCAAAATTGCTCTTCACGTCGCACGTGT
3' Flanking SequenceGATTCCCCACGCACCGTAATATTCCTTTTTCTCTTTTTCAATTTCACCTATTTTTTATTA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018208.1chromosomeCM018208.1:26059600..26059721 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:26228185..26228306 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016620.1chromosomeCM016620.1:58299487..58299607 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr1chromosomeDt_chr1:29167595..29167716 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:25386999..25387119 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:26562399..26562519 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:25475809..25475929 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:26627070..26627191 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:26358716..26358836 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A07chromosomeGbar_A07:26094614..26094735 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:26013678..26013799 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:26015916..26016037 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:26227088..26227209 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:26455653..26455774 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:26857161..26857281 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:27403110..27403231 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:27827733..27827854 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_07chromosomeB_07:26118486..26118607 +Gossypium anomalum (B1) genome NSF_v1n/a
E07chromosomeE07:63223544..63223663 -Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:23867327..23867447 +Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch07_At.07N/A62.05TM19875View
Sequence
>NAU_TM19875 ID=NAU_TM19875; Name=NAU_TM19875; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
GTGTGTCGTTCTCAAGCCGTCGACGGATGCCATCAAAATTGCTCTTCACG
TCGCACGTGT[A/T]GATTCCCCACGCACCGTAATATTCCTTTTTCTCTT
TTTCAATTTCACCTATTTTTTATTA