NAU_TM13347, NAU_TM13347 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM13347
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM13347
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTTAAAAAAAGGGTTTCGACAGGCATAATATAAAGAAAGAAAGCCTAAAGAAAAGCATTTG
3' Flanking SequenceGGCTTAATAAGAAAGAAAAGTCATTGCGACGTAATATGAAAGAAAGCCTTTGTGGCGTAA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018206.1chromosomeCM018206.1:99105611..99105731 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:95018922..95019042 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:57584885..57585005 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:88874525..88874645 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:105860757..105860877 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:107438232..107438352 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:105964361..105964481 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:103917905..103918025 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:99201194..99201314 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:104086606..104086726 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:101533554..101533674 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:110029223..110029343 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:102045405..102045525 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:107744263..107744383 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:3680965..3681085 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:3624050..3624170 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch05_At.05N/A181.9TM13347View
2LMY28 x XLZ24, RIL (2018)AD_ch05_At.05N/A159.73TM13347View
Sequence
>NAU_TM13347 ID=NAU_TM13347; Name=NAU_TM13347; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TTAAAAAAAGGGTTTCGACAGGCATAATATAAAGAAAGAAAGCCTAAAGA
AAAGCATTTG[C/T]GGCTTAATAAGAAAGAAAAGTCATTGCGACGTAAT
ATGAAAGAAAGCCTTTGTGGCGTAA