NAU_TM10904, NAU_TM10904 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM10904
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM10904
TypeSNP
SNP AllelesC/T
5' Flanking SequenceTATTATTGTTCTTTGAAGAAAATACATACCCATTCTCCAGGACACAAGGCACGATAATAC
3' Flanking SequenceTTGCAAACTTATCACACTCTGGAGCACCTTCTCCTTTTGCAGCTACACAACTGTATAAGA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018206.1chromosomeCM018206.1:21778374..21778494 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:22270784..22270904 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_05chromosomeD10_05:41794057..41794177 -Gossypium turneri (D10) genome NSF_v1_a2
At_chr9chromosomeAt_chr9:38918643..38918763 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A05chromosomeA05:20097749..20097869 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A05chromosomeGhir_A05:22310047..22310167 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A05chromosomeA05:21662327..21662447 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A05chromosomeA05:22342826..22342946 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A05chromosomeA05:22507703..22507823 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A05chromosomeGbar_A05:21447190..21447310 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A05chromosomeA05:22138609..22138729 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017614.1chromosomeCM017614.1:21936168..21936288 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017640.1chromosomeCM017640.1:22284735..22284855 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017692.1chromosomeCM017692.1:21670438..21670558 +Gossypium darwinii (AD5) genome HGS_v1.1
A05chromosomeA05:22682604..22682724 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr05chromosomeChr05:23791451..23791571 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr05chromosomeChr05:22183233..22183353 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
B_05chromosomeB_05:64166957..64167077 -Gossypium anomalum (B1) genome NSF_v1
chr09chromosomechr09:17197954..17198074 +Gossypium armourianum (D2-1) genome ISU_v1
Chr_09chromosomeChr_09:15993764..15993884 +Gossypium harknessii (D2-2) genome ISU_v1
Chr09chromosomeChr09:19862833..19862953 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr09chromosomeChr09:16273987..16274107 +Gossypium aridum (D4) genome ISU_v1
Chr09chromosomeChr09:14273791..14273911 +Gossypium gossypioides (D6) genome ISU_v1
Chr09chromosomeChr09:16569366..16569486 +Gossypium lobatum (D7) genome ISU_v1
E05chromosomeE05:24127784..24127904 +Gossypium stocksii (E1) genome NSF_v1
F05chromosomeF05:19115759..19115879 +Gossypium longicalyx (F1) genome NSF_v1
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch05_At.05N/A76.8TM10904View
2LMY28 x XLZ24, RIL (2018)AD_ch05_At.05N/A72.04TM10904View
Sequence
>NAU_TM10904 ID=NAU_TM10904; Name=NAU_TM10904; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TATTATTGTTCTTTGAAGAAAATACATACCCATTCTCCAGGACACAAGGC
ACGATAATAC[C/T]TTGCAAACTTATCACACTCTGGAGCACCTTCTCCT
TTTGCAGCTACACAACTGTATAAGA