NAU_TM10778, NAU_TM10778 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM10778
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM10778
TypeSNP
SNP AllelesC/T
5' Flanking SequenceACACAATATGATATACCACAAGAACCATTTCACTTTCTCAATTATAACCGTATTGACCCA
3' Flanking SequenceAGGGCTCATAATAAACGGATCACATGGTCATTCACATGCTATTTCTCATTGCTTCAGCAT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018206.1chromosomeCM018206.1:17857880..17858000 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
At_chr9chromosomeAt_chr9:43865933..43866053 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:16594501..16594621 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:18217830..18217950 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:17673624..17673744 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:18230759..18230879 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:18404337..18404457 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:17466074..17466194 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:18152732..18152852 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:17862541..17862661 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:18300932..18301052 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:17693450..17693570 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:18508460..18508580 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:19230832..19230952 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
F05chromosomeF05:15457517..15457637 +Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch05_At.05N/A54.6TM10778View
Sequence
>NAU_TM10778 ID=NAU_TM10778; Name=NAU_TM10778; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
ACACAATATGATATACCACAAGAACCATTTCACTTTCTCAATTATAACCG
TATTGACCCA[C/T]AGGGCTCATAATAAACGGATCACATGGTCATTCAC
ATGCTATTTCTCATTGCTTCAGCAT