TAMU_GH_TBb007N12f463, TAMU_GH_TBb007N12f463 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb007N12f463
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i23722Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr06chromosomeChr06:46477568..46477568 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D09chromosomeD09:48098397..48098491 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:45726948..45727042 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:39144130..39144224 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:4693759..4693853 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr6chromosomeDt_chr6:4626554..4626648 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:45884219..45884313 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:47885460..47885554 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:47281935..47282029 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:47617915..47618009 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:45717078..45717172 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:46484121..46484215 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:48996603..48996697 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:46691064..46691158 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:48148590..48148684 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:47335795..47335889 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:49420740..49420834 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:45366733..45366827 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:46057943..46058037 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:38104178..38104272 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:31948794..31948888 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:47164598..47164692 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:35313388..35313481 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:32698069..32698162 +Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch06_At.06N/A40.89i23722GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch06_At.06N/A40.89i23722GhView
Sequence
>TAMU_GH_TBb007N12f463 ID=TAMU_GH_TBb007N12f463; Name=TAMU_GH_TBb007N12f463; organism=Gossypium sp.; type=genetic_marker; length=99bp
TTTACATTAGCATTGTGCAAAAGATTCTTTGGGTTTGGTTACATGATATG
[C/T]TTTTGAAAAAAATATTATACGAATGCCTTCATTTCTGTGTGCAG