NAU_TM09953, NAU_TM09953 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM09953
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM09953
TypeSNP
SNP AllelesG/A
5' Flanking SequenceAGAATAGTGAGGCAACGTTACCGTCAGGGCCTATGAGCCTATCCCGAGAAGGATAAGATC
3' Flanking SequenceAACTTGGGGCAATCACTAATGTCGGGAACACTGACCGTTAGTGTTTATTAGCTAGCGTAT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018205.1chromosomeCM018205.1:80785461..80785581 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
tig00015727_CRI-A2_v1.0.a1chromosometig00015727_CRI-A2_v1.0.a1:245974..246094 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold1142.1supercontigscaffold1142.1:456881..457001 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A04chromosomeA04:62720615..62720735 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:84926214..84926334 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:87532314..87532434 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:84439042..84439162 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:80831422..80831542 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A04chromosomeGbar_A04:81376526..81376646 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:81783532..81783652 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:83253777..83253897 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:81943058..81943178 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:89001655..89001775 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:109417715..109417835 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:111151200..111151320 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F04chromosomeF04:90865661..90865781 +Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch04_At.04N/A120.3TM9953View
2LMY28 x XLZ24, RIL (2018)AD_ch04_At.04N/A0.75TM9953View
Sequence
>NAU_TM09953 ID=NAU_TM09953; Name=NAU_TM09953; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
AGAATAGTGAGGCAACGTTACCGTCAGGGCCTATGAGCCTATCCCGAGAA
GGATAAGATC[A/G]AACTTGGGGCAATCACTAATGTCGGGAACACTGAC
CGTTAGTGTTTATTAGCTAGCGTAT