NAU_TM09862, NAU_TM09862 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM09862
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM09862
TypeSNP
SNP AllelesC/T
5' Flanking SequenceCTTTGTACTAAGTTTGATTGCATTTTACCCCTCTACTAAAAAAAAGGGCAAATTAGTCCC
3' Flanking SequenceATACAAAGTCAAAGAGCAAACAGGCCCATGTTTTTTTAGTAAAGGGGGTAAAATGCAATC
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018205.1chromosomeCM018205.1:78686527..78686647 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:2833227..2833347 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A04chromosomeA04:60813368..60813488 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:82732485..82732605 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:85441867..85441987 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:82978658..82978778 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:78651548..78651668 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A04chromosomeGbar_A04:79162582..79162702 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:79565384..79565504 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:81198911..81199031 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:89723668..89723788 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:79698521..79698641 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:86742901..86743021 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:106674195..106674315 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:108453093..108453213 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch04_At.04N/A0.37TM9862View
Sequence
>NAU_TM09862 ID=NAU_TM09862; Name=NAU_TM09862; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
CTTTGTACTAAGTTTGATTGCATTTTACCCCTCTACTAAAAAAAAGGGCA
AATTAGTCCC[C/T]ATACAAAGTCAAAGAGCAAACAGGCCCATGTTTTT
TTAGTAAAGGGGGTAAAATGCAATC