NAU_TM05813, NAU_TM05813 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM05813
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM05813
TypeSNP
SNP AllelesC/T
5' Flanking SequenceAAACTCTATTCCCAACATCATGCCCGGTCAACCAGCTATAATCAATCAAATTCCCCATCT
3' Flanking SequenceATGCTCATCTTTGCTGTGTTTAAATGTATGTGGGTACGACTCTTAGGACCAATCTAATCT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018203.1chromosomeCM018203.1:99460199..99460319 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:222754..222874 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016615.1chromosomeCM016615.1:126775..126895 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2568.1supercontigscaffold2568.1:148910..149030 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:83296458..83296578 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:107946661..107946781 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:108142795..108142915 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:105604146..105604266 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:104185502..104185622 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold751supercontigScaffold751:20137..20257 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:102001410..102001530 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:104979821..104979941 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:109789911..109790031 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:102149664..102149784 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:108091569..108091689 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:92820729..92820849 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:102380714..102380834 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_04chromosomeB_04:73820889..73821009 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:139493156..139493276 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch02_At.02N/A57.02TM5813View
Sequence
>NAU_TM05813 ID=NAU_TM05813; Name=NAU_TM05813; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
AAACTCTATTCCCAACATCATGCCCGGTCAACCAGCTATAATCAATCAAA
TTCCCCATCT[C/T]ATGCTCATCTTTGCTGTGTTTAAATGTATGTGGGT
ACGACTCTTAGGACCAATCTAATCT