NAU_TM03845, NAU_TM03845 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM03845
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM03845
TypeSNP
SNP AllelesC/T
5' Flanking SequenceAGCCAACTTTATCCATTTAAAGGCCTCCAAAATTATACCTCTGGAATTATTCACCATGTT
3' Flanking SequenceGCCTCACTGGTATTTCTCACCATCTCTTCTCTTATTTATCTTCTGCTAATTTGTTTTCTT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018216.1chromosomeCM018216.1:3206286..3206406 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018203.1chromosomeCM018203.1:2644506..2644625 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:60620542..60620661 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:2910620..2910740 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016616.1chromosomeCM016616.1:149287310..149287430 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr8chromosomeAt_chr8:73558611..73558731 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold783.1supercontigscaffold783.1:739923..740043 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:3617644..3617764 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A02chromosomeA02:2496406..2496526 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:3568882..3569002 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A02chromosomeGhir_A02:2645219..2645339 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:3387767..3387887 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:2561276..2561396 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:3564582..3564702 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:2766090..2766210 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:3511099..3511219 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A02chromosomeA02:2664124..2664244 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:3651110..3651230 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A02chromosomeGbar_A02:2571765..2571884 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:2596606..2596725 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:4584638..4584758 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017624.1chromosomeCM017624.1:3129134..3129254 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017611.1chromosomeCM017611.1:2637443..2637563 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:2752170..2752290 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:3642838..3642958 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017702.1chromosomeCM017702.1:3227677..3227797 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017689.1chromosomeCM017689.1:2668990..2669109 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:3666372..3666492 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A02chromosomeA02:2778597..2778717 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:129140920..129141040 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:127944861..127944981 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:2906242..2906362 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:104299224..104299344 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:3342714..3342834 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr05chromosomeChr05:3610901..3611021 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:2983070..2983190 +Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:4227867..4227987 +Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:2653076..2653196 +Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch02_At.02N/A20.16TM3845View
Sequence
>NAU_TM03845 ID=NAU_TM03845; Name=NAU_TM03845; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
AGCCAACTTTATCCATTTAAAGGCCTCCAAAATTATACCTCTGGAATTAT
TCACCATGTT[C/T]GCCTCACTGGTATTTCTCACCATCTCTTCTCTTAT
TTATCTTCTGCTAATTTGTTTTCTT