NAU_TM03716, NAU_TM03716 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM03716
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM03716
TypeSNP
SNP AllelesG/A
5' Flanking SequenceCACCGTTGTTTCGTGGTTTCGGAACACTTCCGTCACGGCTTTCCCCGACACCGATGCCGG
3' Flanking SequenceAACTCGGCATATCGGTATTTCAGAAACATCGTCGACGTTCACGGTATAAAAACCACGGCG
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018203.1chromosomeCM018203.1:291238..291358 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:309765..309885 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold1428.1supercontigscaffold1428.1:306197..306317 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:307309..307429 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:324390..324510 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:337391..337511 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:314431..314551 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:316012..316132 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A02chromosomeGbar_A02:223665..223785 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:273155..273275 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:319870..319990 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:322739..322859 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:292957..293077 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:311451..311571 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:132356270..132356390 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:130567469..130567589 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F03chromosomeF03:368582..368702 +Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch02_At.02N/A0TM3716View
2LMY28 x XLZ24, RIL (2018)AD_ch02_At.02N/A1.73TM3716View
Sequence
>NAU_TM03716 ID=NAU_TM03716; Name=NAU_TM03716; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
CACCGTTGTTTCGTGGTTTCGGAACACTTCCGTCACGGCTTTCCCCGACA
CCGATGCCGG[A/G]AACTCGGCATATCGGTATTTCAGAAACATCGTCGA
CGTTCACGGTATAAAAACCACGGCG