NAU_TM01109, NAU_TM01109 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM01109
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM01109
TypeSNP
SNP AllelesT/C
5' Flanking SequenceAAAGATATTATCTGGGTTTTTGTAGATCGATTAACGAAATCAACACATTTAATTCCGGTA
3' Flanking SequenceGTACTGACTATTCACTTGATAAATTGGCTAAGTTGTACATATCTGAGATTGTTAGATTGC
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:20694865..20694985 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:22919587..22919707 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:30253370..30253490 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr2chromosomeAt_chr2:16457372..16457492 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:21217367..21217487 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:20997243..20997363 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:21098869..21098989 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:21600312..21600432 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:21479742..21479862 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:20842020..20842140 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:20670154..20670274 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:22219676..22219796 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:21350245..21350365 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:20848573..20848693 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:21759626..21759746 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:21851005..21851125 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:23232031..23232151 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch01_At.01N/A71.11TM1109View
Sequence
>NAU_TM01109 ID=NAU_TM01109; Name=NAU_TM01109; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
AAAGATATTATCTGGGTTTTTGTAGATCGATTAACGAAATCAACACATTT
AATTCCGGTA[C/T]GTACTGACTATTCACTTGATAAATTGGCTAAGTTG
TACATATCTGAGATTGTTAGATTGC