NAU_TM01027, NAU_TM01027 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM01027
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM01027
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGGAGCGATGATCGTGGGATGTCAGTAGGAAAAGTGTAAAATTCAGTGAGCTGGTAAGGTT
3' Flanking SequenceTAAGTCCTTCGTGGTTGTAAGATTTAAAAAATAAAGTTAAGAGTTTTCAGAACCATTTTA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:19735322..19735443 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:21855589..21855710 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:29264416..29264537 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:20250327..20250447 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:20014770..20014890 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:20112050..20112170 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:20617033..20617154 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:20496353..20496474 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:19882735..19882856 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:19700667..19700788 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:21205030..21205151 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:20329323..20329444 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:19905324..19905445 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:20756435..20756555 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:22125020..22125141 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch01_At.01N/A70.51TM1027View
Sequence
>NAU_TM01027 ID=NAU_TM01027; Name=NAU_TM01027; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
GGAGCGATGATCGTGGGATGTCAGTAGGAAAAGTGTAAAATTCAGTGAGC
TGGTAAGGTT[C/T]TAAGTCCTTCGTGGTTGTAAGATTTAAAAAATAAA
GTTAAGAGTTTTCAGAACCATTTTA