NAU_TM00361, NAU_TM00361 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00361
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00361
TypeSNP
SNP AllelesG/A
5' Flanking SequenceCTCAAAGCTTGAGCTGGAAAAGCTATAAAATTGTCCGCCAGTTGGAATCACACCCTGCAA
3' Flanking SequenceTGATTATATGCCACGCTAAATTTTGACAAAAATGTAAGCTCGGCAAATGACAGCGGAATT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018215.1chromosomeCM018215.1:6227914..6228034 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:7508162..7508282 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:5949312..5949432 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:8503665..8503785 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:54417148..54417268 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr3chromosomeAt_chr3:93165564..93165684 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr2chromosomeAt_chr2:7857468..7857588 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:7125581..7125701 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:7437918..7438038 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:7194510..7194630 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:7592842..7592962 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:7388596..7388716 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:6904768..6904888 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:7471406..7471526 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:6667367..6667487 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:7196897..7197017 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:6419433..6419553 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:8430595..8430715 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:7225207..7225327 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:7576399..7576519 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:6585429..6585549 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:7606532..7606652 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:7601436..7601556 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:7565813..7565933 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:8311807..8311927 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:5939339..5939459 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:6382401..6382521 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:6621475..6621595 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr02chromosomeChr02:6632324..6632444 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:7786595..7786715 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:5295439..5295559 +Gossypium gossypioides (D6) genome ISU_v1n/a
E01chromosomeE01:9128720..9128840 +Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:6565772..6565892 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:189916601..189916721 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch01_At.01N/A22.65TM361View
Sequence
>NAU_TM00361 ID=NAU_TM00361; Name=NAU_TM00361; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
CTCAAAGCTTGAGCTGGAAAAGCTATAAAATTGTCCGCCAGTTGGAATCA
CACCCTGCAA[A/G]TGATTATATGCCACGCTAAATTTTGACAAAAATGT
AAGCTCGGCAAATGACAGCGGAATT