NAU_TM00044, NAU_TM00044 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00044
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00044
TypeSNP
SNP AllelesG/A
5' Flanking SequenceTCTTACCATTGCAACTTCTGAATCTGAATCATGACTAAGCCTGCTTAATGTGTCCATAAC
3' Flanking SequenceTTAACCTGCATAATATCACATCGATCAAGCTCGTTTGCTGTGATGAAAAACTGGTGACTC
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018215.1chromosomeCM018215.1:1502463..1502583 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018202.1chromosomeCM018202.1:1577254..1577374 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_01chromosomeD5_01:1382867..1382987 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:1574495..1574615 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_01chromosomeD10_01:59082046..59082166 -Gossypium turneri (D10) genome NSF_v1_a2
scaffold2140.1supercontigscaffold2140.1:25267..25387 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
At_chr9chromosomeAt_chr9:83588643..83588763 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold783.1supercontigscaffold783.1:572395..572514 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D01chromosomeD01:1484022..1484141 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A01chromosomeA01:1271683..1271803 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D01chromosomeGhir_D01:1537256..1537375 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A01chromosomeGhir_A01:1813560..1813680 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D01chromosomeD01:1489558..1489677 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A01chromosomeA01:1765467..1765587 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D01chromosomeD01:1515188..1515307 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A01chromosomeA01:1833330..1833450 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D01chromosomeD01:1327402..1327521 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A01chromosomeA01:1798726..1798846 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_D01chromosomeGbar_D01:1597367..1597487 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A01chromosomeGbar_A01:1572136..1572256 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D01chromosomeD01:1529948..1530067 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A01chromosomeA01:1569853..1569973 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017623.1chromosomeCM017623.1:1630066..1630186 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017610.1chromosomeCM017610.1:1807348..1807468 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017649.1chromosomeCM017649.1:1452879..1452999 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017636.1chromosomeCM017636.1:1613108..1613228 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017701.1chromosomeCM017701.1:1726813..1726933 +Gossypium darwinii (AD5) genome HGS_v1.1
CM017688.1chromosomeCM017688.1:1614630..1614750 +Gossypium darwinii (AD5) genome HGS_v1.1
D01chromosomeD01:1510046..1510165 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A01chromosomeA01:1831823..1831943 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr01chromosomeChr01:1576848..1576966 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr01chromosomeChr01:1507507..1507627 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr01chromosomeChr01:1360452..1360572 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_01chromosomeB_01:1619719..1619839 +Gossypium anomalum (B1) genome NSF_v1
Chr02chromosomeChr02:1543129..1543248 +Gossypium thurberi (D1-5) genome CRI_v1
chr02chromosomechr02:1374603..1374723 +Gossypium armourianum (D2-1) genome ISU_v1
Chr_02chromosomeChr_02:1527252..1527372 +Gossypium harknessii (D2-2) genome ISU_v1
Chr02chromosomeChr02:1672004..1672124 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr02chromosomeChr02:1179227..1179347 +Gossypium aridum (D4) genome ISU_v1
Chr02chromosomeChr02:1138617..1138737 +Gossypium gossypioides (D6) genome ISU_v1
F01chromosomeF01:1368428..1368548 +Gossypium longicalyx (F1) genome NSF_v1
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch01_At.01N/A8.4TM44View
Sequence
>NAU_TM00044 ID=NAU_TM00044; Name=NAU_TM00044; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TCTTACCATTGCAACTTCTGAATCTGAATCATGACTAAGCCTGCTTAATG
TGTCCATAAC[A/G]TTAACCTGCATAATATCACATCGATCAAGCTCGTT
TGCTGTGATGAAAAACTGGTGACTC