NAU_TM00044, NAU_TM00044 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00044
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00044
TypeSNP
SNP AllelesG/A
5' Flanking SequenceTCTTACCATTGCAACTTCTGAATCTGAATCATGACTAAGCCTGCTTAATGTGTCCATAAC
3' Flanking SequenceTTAACCTGCATAATATCACATCGATCAAGCTCGTTTGCTGTGATGAAAAACTGGTGACTC
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM018215.1chromosomeCM018215.1:1502463..1502583 +
CM018202.1chromosomeCM018202.1:1577254..1577374 +
D5_01chromosomeD5_01:1382867..1382987 +
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:1574495..1574615 +
D10_01chromosomeD10_01:59082046..59082166 -
scaffold2140.1supercontigscaffold2140.1:25267..25387 +
At_chr9chromosomeAt_chr9:83588643..83588763 +
scaffold783.1supercontigscaffold783.1:572395..572514 -
D01chromosomeD01:1484022..1484141 +
A01chromosomeA01:1271683..1271803 +
Ghir_D01chromosomeGhir_D01:1537256..1537375 +
Ghir_A01chromosomeGhir_A01:1813560..1813680 +
D01chromosomeD01:1489558..1489677 +
A01chromosomeA01:1765467..1765587 +
D01chromosomeD01:1515188..1515307 +
A01chromosomeA01:1833330..1833450 +
D01chromosomeD01:1327402..1327521 +
A01chromosomeA01:1798726..1798846 +
Gbar_D01chromosomeGbar_D01:1597367..1597487 +
Gbar_A01chromosomeGbar_A01:1572136..1572256 +
D01chromosomeD01:1529948..1530067 +
A01chromosomeA01:1569853..1569973 +
CM017623.1chromosomeCM017623.1:1630066..1630186 +
CM017610.1chromosomeCM017610.1:1807348..1807468 +
CM017649.1chromosomeCM017649.1:1452879..1452999 +
CM017636.1chromosomeCM017636.1:1613108..1613228 +
CM017701.1chromosomeCM017701.1:1726813..1726933 +
CM017688.1chromosomeCM017688.1:1614630..1614750 +
D01chromosomeD01:1510046..1510165 +
A01chromosomeA01:1831823..1831943 +
Chr01chromosomeChr01:1576848..1576966 +
Chr01chromosomeChr01:1507507..1507627 +
Chr01chromosomeChr01:1360452..1360572 +
B_01chromosomeB_01:1619719..1619839 +
Chr02chromosomeChr02:1543129..1543248 +
chr02chromosomechr02:1374603..1374723 +
Chr_02chromosomeChr_02:1527252..1527372 +
Chr02chromosomeChr02:1672004..1672124 +
Chr02chromosomeChr02:1179227..1179347 +
Chr02chromosomeChr02:1138617..1138737 +
F01chromosomeF01:1368428..1368548 +
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch01_At.01N/A8.4TM44View
Sequence
>NAU_TM00044 ID=NAU_TM00044; Name=NAU_TM00044; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TCTTACCATTGCAACTTCTGAATCTGAATCATGACTAAGCCTGCTTAATG
TGTCCATAAC[A/G]TTAACCTGCATAATATCACATCGATCAAGCTCGTT
TGCTGTGATGAAAAACTGGTGACTC