NAU_TM00018, NAU_TM00018 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00018
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00018
TypeSNP
SNP AllelesG/A
5' Flanking SequenceTTTTAAACATTAACTTTGAAGAAAACACTTAATCCGTGCAAATAAAATCTTGATTCTCAC
3' Flanking SequenceTTCACAGTGACTGTATCCATCTCCTTTGAATTGCATGCCATCAACCAAGGGACATTCACA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:614333..614453 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:679106..679226 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:671789..671909 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:59787264..59787384 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold944.1supercontigscaffold944.1:404604..404724 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:728725..728845 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:779066..779186 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:744543..744663 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:795934..796054 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:774065..774185 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:588849..588969 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:680809..680929 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:714607..714727 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:645349..645469 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:714832..714952 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:800504..800624 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:617334..617454 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:604633..604753 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:657886..658006 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr02chromosomechr02:651319..651439 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:696471..696591 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:549014..549134 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:544955..545075 +Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>NAU_TM00018 ID=NAU_TM00018; Name=NAU_TM00018; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TTTTAAACATTAACTTTGAAGAAAACACTTAATCCGTGCAAATAAAATCT
TGATTCTCAC[A/G]TTCACAGTGACTGTATCCATCTCCTTTGAATTGCA
TGCCATCAACCAAGGGACATTCACA