NAU_TM00011, NAU_TM00011 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00011
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00011
TypeSNP
SNP AllelesA/G
5' Flanking SequenceAAGTGACCTGAAAGGAAAAACTAAACATAGCATCAAACTCAATACAAATGTTAAAAACTA
3' Flanking SequenceAAATTAATGGGTCAAAACAATAAATATGAATAGCAGTAACTTTATTTATAAATTTTAAGC
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:424272..424392 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:497634..497754 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold944.1supercontigscaffold944.1:594945..595065 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:544559..544679 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:589184..589304 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:560219..560339 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:605964..606084 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:583981..584101 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:398814..398934 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:491461..491581 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:524568..524688 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:470883..471003 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:524580..524700 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:610475..610595 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:436187..436308 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:430506..430626 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F01chromosomeF01:464848..464969 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>NAU_TM00011 ID=NAU_TM00011; Name=NAU_TM00011; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
AAGTGACCTGAAAGGAAAAACTAAACATAGCATCAAACTCAATACAAATG
TTAAAAACTA[A/G]AAATTAATGGGTCAAAACAATAAATATGAATAGCA
GTAACTTTATTTATAAATTTTAAGC