NAU_TM00010, NAU_TM00010 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00010
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00010
TypeSNP
SNP AllelesA/T
5' Flanking SequenceTATGCATATATATATATCTTCACAGCATATATATGCACTAAACTTAACTGCAAAAAGGCG
3' Flanking SequenceATCTCGGCAATATATGTATCATTTGTATCAGGATCCATCAATCCCTGGAAGATTCTCTTG
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018215.1chromosomeCM018215.1:418774..418896 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:378647..378767 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
scaffold280.1supercontigscaffold280.1:430413..430535 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4608.1supercontigscaffold4608.1:2625..2745 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:415540..415662 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:471925..472045 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:463233..463355 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:527827..527947 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:454860..454982 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:484216..484336 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:428286..428408 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:526409..526529 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:522597..522719 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:460656..460778 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:353166..353286 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:447177..447299 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:446156..446276 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:443288..443406 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:478967..479085 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:455549..455669 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:427010..427132 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:459411..459531 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:478908..479028 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:420031..420153 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:524575..524695 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
chr02chromosomechr02:431907..432027 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Sequence
>NAU_TM00010 ID=NAU_TM00010; Name=NAU_TM00010; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TATGCATATATATATATCTTCACAGCATATATATGCACTAAACTTAACTG
CAAAAAGGCG[A/T]ATCTCGGCAATATATGTATCATTTGTATCAGGATC
CATCAATCCCTGGAAGATTCTCTTG