NAU_TM00006, NAU_TM00006 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00006
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00006
TypeSNP
SNP AllelesG/A
5' Flanking SequenceGGATATTCCTAATGGTAGGAAGAACTGGGGGTAGACTGACATGATCTATTATTGATCCTG
3' Flanking SequenceTTCTCCAGTCTATAAATTTTAACATTATCTGAGTATCCATGAGGTTATAAAACCGAGGAC
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:186673..186793 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:272517..272637 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold1755.1supercontigscaffold1755.1:70054..70174 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:257944..258064 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:303787..303907 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:255026..255146 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:307153..307273 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:298178..298298 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:161213..161333 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:254798..254918 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:283629..283749 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:239920..240040 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:289608..289728 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:297143..297263 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:207985..208105 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:205382..205502 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch01_At.01N/A0TM6View
Sequence
>NAU_TM00006 ID=NAU_TM00006; Name=NAU_TM00006; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
GGATATTCCTAATGGTAGGAAGAACTGGGGGTAGACTGACATGATCTATT
ATTGATCCTG[A/G]TTCTCCAGTCTATAAATTTTAACATTATCTGAGTA
TCCATGAGGTTATAAAACCGAGGAC