NAU_TM00004, NAU_TM00004 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00004
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00004
TypeSNP
SNP AllelesT/G
5' Flanking SequenceCCCCAGTTTTCTTCTCAAATTTTAGTTCATTGGTTGTAGACCATATAATAACATGTTCTG
3' Flanking SequenceCAATAGGCTTTACTCAAGTTTATCTCTAGCACTTGATTAATAAATGTTCTTTTGGTGCCA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018202.1chromosomeCM018202.1:182176..182296 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:268019..268139 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
scaffold1755.1supercontigscaffold1755.1:74552..74672 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A01chromosomeA01:253446..253566 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A01chromosomeGhir_A01:299294..299414 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A01chromosomeA01:250528..250648 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A01chromosomeA01:302655..302775 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A01chromosomeA01:293680..293800 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A01chromosomeGbar_A01:156716..156836 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A01chromosomeA01:250301..250421 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017610.1chromosomeCM017610.1:279131..279251 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017636.1chromosomeCM017636.1:235422..235542 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017688.1chromosomeCM017688.1:285111..285231 +Gossypium darwinii (AD5) genome HGS_v1.1
A01chromosomeA01:292645..292765 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr01chromosomeChr01:203487..203607 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr01chromosomeChr01:200884..201004 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
B_01chromosomeB_01:273900..274020 +Gossypium anomalum (B1) genome NSF_v1
Chr02chromosomeChr02:193367..193487 +Gossypium lobatum (D7) genome ISU_v1
F01chromosomeF01:240859..240979 +Gossypium longicalyx (F1) genome NSF_v1
Chr01chromosomeChr01:199614875..199614995 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch01_At.01N/A0TM4View
Sequence
>NAU_TM00004 ID=NAU_TM00004; Name=NAU_TM00004; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
CCCCAGTTTTCTTCTCAAATTTTAGTTCATTGGTTGTAGACCATATAATA
ACATGTTCTG[G/T]CAATAGGCTTTACTCAAGTTTATCTCTAGCACTTG
ATTAATAAATGTTCTTTTGGTGCCA