USDA_SNP0445, USDA_SNP0445 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0445
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00103Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr11chromosomeChr11:2112921..2112921 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018224.1chromosomeCM018224.1:2218000..2218062 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:60318175..60318237 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_10chromosomeD10_10:61859086..61859148 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:2939780..2939842 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold40199supercontigscaffold40199:844..906 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:2099433..2099495 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:2606778..2606840 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:2315273..2315335 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:2394560..2394622 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:2443634..2443696 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:2258179..2258241 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:2290633..2290695 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:2259213..2259275 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:2329763..2329825 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D10chromosomeD10:2386632..2386694 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:2082672..2082734 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:2093375..2093437 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:2145411..2145473 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:1708152..1708214 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:2285782..2285844 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:1780378..1780440 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:1653477..1653539 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:2168651..2168713 +Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>USDA_SNP0445 ID=USDA_SNP0445; Name=USDA_SNP0445; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTGTCATTTACCTCGAGGATCCTTCTATCTAATGGTATAACCAAGA
GCAGATCCACC[A/G]C