TAMU_Gl_000364, TAMU_Gl_000364 (genetic_marker) Gossypium longicalyx

Marker Overview
NameTAMU_Gl_000364
AliasGl_000364_Class_III
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceACTGAAGAATAGAATAGAAAAAGCAAACATGTAAATTTTGTTTGAAATAA
3' Flanking SequenceCTTGTATCCTACTGTTATCTTGTACAATTACTACAATAAATTGATGGCTT
SpeciesGossypium longicalyx
GermplasmBLC_200908137.04
Source TypeRNA
Publication[view all]
ContactStelly, David M.
Commentclass_III: a SNP in which additional polymorphisms were found in the same contig and within 50 bp of the marker
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018206.1chromosomeCM018206.1:99095105..99095205 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:95008417..95008517 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:57574388..57574488 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:88864021..88864121 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:105850260..105850360 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:4835898..4835998 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:107427866..107427966 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:105953888..105953988 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:103907401..103907501 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:99190688..99190788 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:104076214..104076314 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:101523048..101523148 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:110018714..110018814 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:102034918..102035018 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:107733759..107733859 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:3691487..3691587 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:3634568..3634668 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
BLC_200908137.04accession
Sequence
>TAMU_Gl_000364 ID=TAMU_Gl_000364; Name=TAMU_Gl_000364; organism=Gossypium longicalyx; type=genetic_marker; length=105bp
ACTGAAGAATAGAATAGAAAAAGCAAACATGTAAATTTTGTTTGAAATAA
[A/G]CTTGTATCCTACTGTTATCTTGTACAATTACTACAATAAATTGAT
GGCTT