TAMU_GH_TBb083H08f198, TAMU_GH_TBb083H08f198 (genetic_marker) Gossypium barbadense

Marker Overview
NameTAMU_GH_TBb083H08f198
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
SpeciesGossypium barbadense
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:2139522..2139622 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:1979987..1980087 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:100931453..100931553 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr8chromosomeAt_chr8:41436276..41436376 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:2040812..2040912 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:2097680..2097780 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:2084248..2084348 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:2130761..2130861 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:2107134..2107234 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A12chromosomeGbar_A12:1956592..1956692 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:2018791..2018891 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:1933108..1933208 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:2183321..2183421 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:1830827..1830927 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:2143379..2143479 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:1999115..1999215 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:2018979..2019079 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>TAMU_GH_TBb083H08f198 ID=TAMU_GH_TBb083H08f198; Name=TAMU_GH_TBb083H08f198; organism=Gossypium barbadense; type=genetic_marker; length=105bp
ATTTAACCACTCTCAATACTTTATCATATGAATAGTCATGCAATTTGGCA
[C/T]TTGAGTTTGTCTTTAATGCTCATTTTGGTACTTGAATTTTTTTTA
AATTG