TAMU_GH_TBb007K19r128, TAMU_GH_TBb007K19r128 (genetic_marker) Gossypium barbadense

Marker Overview
NameTAMU_GH_TBb007K19r128
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
SpeciesGossypium barbadense
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A12chromosomeA12:95211497..95211597 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018213.1chromosomeCM018213.1:92145750..92145850 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:7658664..7658764 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold821.1supercontigscaffold821.1:419995..420095 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:80631913..80632013 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:99831182..99831282 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:100187930..100188030 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:97997212..97997312 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:94917699..94917799 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A12chromosomeGbar_A12:94862197..94862297 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:94113155..94113255 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:95206785..95206885 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:98889345..98889445 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:94451853..94451953 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:101522531..101522631 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:102665787..102665887 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:109630253..109630353 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>TAMU_GH_TBb007K19r128 ID=TAMU_GH_TBb007K19r128; Name=TAMU_GH_TBb007K19r128; organism=Gossypium barbadense; type=genetic_marker; length=105bp
GGTTCTACAGCCAAGTGCCACATTCGAAACCTGAATCAGTCTGTCATTGA
[A/T]AACACGCAGAGGCAGAGCCGCTATGCTATCACATTCGACCATAAC
CCGTC