g.arboreum_cottongen_reftransV1_0006030, g.arboreum_cottongen_reftransV1_0006030 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: A0A0B0MN01_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_23706 PE=4 SV=1) HSP 1 Score: 530.406 bits (1365), Expect = 6.949e-180 Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = -2 Query: 400 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQ 1155 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQ Sbjct: 443 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQ 694 HSP 2 Score: 72.0182 bits (175), Expect = 2.209e-10 Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = -1 Query: 236 VSTEKLQNLMIANGIISKVLLGVKELYVLTNSAHC 340 +STEKLQNLMIANGIISKVLLGVKELYVLTNSAHC Sbjct: 695 ISTEKLQNLMIANGIISKVLLGVKELYVLTNSAHC 729
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: A0A0D2PWB3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G200700 PE=4 SV=1) HSP 1 Score: 528.48 bits (1360), Expect = 2.294e-179 Identity = 250/255 (98.04%), Postives = 253/255 (99.22%), Query Frame = -2 Query: 391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155 VASGDSDVNDAVSEAGLIIL HPLEADKEEKVENIDTLEA+PEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRA PAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQV+VLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQIS+EEYEVMKDLIIPLGRAPHFSAQSGA Sbjct: 454 VASGDSDVNDAVSEAGLIILAHPLEADKEEKVENIDTLEAEPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRAFPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVIVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISMEEYEVMKDLIIPLGRAPHFSAQSGA 708
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: A0A0B0MJC7_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_23706 PE=4 SV=1) HSP 1 Score: 526.554 bits (1355), Expect = 9.806e-179 Identity = 255/266 (95.86%), Postives = 255/266 (95.86%), Query Frame = -2 Query: 391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLT-----------LSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLT LSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA Sbjct: 443 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTVSLIDGQECHKLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 708
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: A0A061GXF8_THECC (F2P16.20 protein, putative isoform 1 OS=Theobroma cacao GN=TCM_042182 PE=4 SV=1) HSP 1 Score: 457.218 bits (1175), Expect = 3.225e-151 Identity = 220/255 (86.27%), Postives = 231/255 (90.59%), Query Frame = -2 Query: 391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155 VASGDSDV DAV E GLIILP E DKEE +E+ D LE PE PVKWP KPGIP SD F+PEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDE+FHEEYLS+NGREYP+KI LRDGRSSEIKETLA CISRALPAIVT LRLPIPISTLEQGMG L+DT+SF+EALPAFRMKQWQV+VLL IDALSVCRIPALTPHMTNGRMLLHKVLDGAQIS+EEYEVMKDLIIPLGRAPHFSAQSGA Sbjct: 489 VASGDSDVTDAVYENGLIILPSLCEVDKEEPMEDGDMLE----PETAPVKWPKKPGIPHSDMFNPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDESFHEEYLSINGREYPRKIALRDGRSSEIKETLASCISRALPAIVTDLRLPIPISTLEQGMGHLIDTISFMEALPAFRMKQWQVIVLLFIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISMEEYEVMKDLIIPLGRAPHFSAQSGA 739
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: A5C2H3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014731 PE=4 SV=1) HSP 1 Score: 405.216 bits (1040), Expect = 5.947e-132 Identity = 193/255 (75.69%), Postives = 218/255 (85.49%), Query Frame = -2 Query: 391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155 VASG++D+ DAVSEAG+IILPHP + D+ E +++ D LE PE P+KWP KPGI SD FD +DSW+D PPEGFSLTLS FATMW ALF WITSSS+AYIYGRDE+FHEEYLSVNGREYP+KIVL DGRSSEIK+TLAGC+SRALP +V LRLPIP+S LEQG+GRLLDTMSFV+ALP+FRMKQWQV+VLL IDALSVCRIPALTPHMT+ RML KV D AQ+S EEYEVMKDLIIPLGR P FSAQSG Sbjct: 409 VASGETDMTDAVSEAGIIILPHPRDMDEGESLKDADLLE----PEPVPLKWPIKPGISHSDIFDSDDSWYDTPPEGFSLTLSPFATMWMALFAWITSSSIAYIYGRDESFHEEYLSVNGREYPKKIVLTDGRSSEIKQTLAGCLSRALPGLVADLRLPIPVSNLEQGVGRLLDTMSFVDALPSFRMKQWQVIVLLFIDALSVCRIPALTPHMTSRRMLFPKVFDAAQVSAEEYEVMKDLIIPLGRVPQFSAQSGG 659
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: D7UA85_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0060g00590 PE=4 SV=1) HSP 1 Score: 397.127 bits (1019), Expect = 7.145e-129 Identity = 189/255 (74.12%), Postives = 216/255 (84.71%), Query Frame = -2 Query: 391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155 VASG++D+ DAVSEA +IILPHP + D+ E +++ D LE PE P+KWP KPGI SD FD +DSW+D PPEGFSLTLS FATMW ALF WITSSS+AYIYGRDE+FHEEYLSVNGREYP+KIVL DGRSSEIK+TLAGC++RALP +V LRLPIP+S LEQG+GRLLDTMSFV+ALP+FRMKQWQV+VLL IDALSVC+IPALTPHM + RML KV D AQ+S EEYEVMKDLIIPLGR P FSAQSG Sbjct: 409 VASGETDMTDAVSEARIIILPHPRDMDEGESLKDADLLE----PEPVPLKWPIKPGISHSDIFDSDDSWYDTPPEGFSLTLSPFATMWMALFAWITSSSIAYIYGRDESFHEEYLSVNGREYPKKIVLTDGRSSEIKQTLAGCLARALPGLVADLRLPIPVSNLEQGVGRLLDTMSFVDALPSFRMKQWQVIVLLFIDALSVCQIPALTPHMISKRMLFPKVFDAAQVSAEEYEVMKDLIIPLGRVPQFSAQSGG 659
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: V4S298_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011677mg PE=4 SV=1) HSP 1 Score: 381.719 bits (979), Expect = 2.399e-125 Identity = 180/255 (70.59%), Postives = 213/255 (83.53%), Query Frame = -2 Query: 391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155 V SGDSDV DAVSEAG+IILP P + + E +E+ D LE PE +KWP+KPGIPRS+ FDPEDSW+D PPEGFSLTLS FATMW A+F WI+SSSLAYIYGRDE+FHEEYLSVNGREY QKI++ DG SS IK+TL+GC++R PA+V LRL IP+STLE+G+ LL+TMSF++ LPAF++KQWQV+ +L +DALSVCRIPALTPHMTN MLL KVLDGAQIS EEYEVMKD ++PLGRAP FS+QSGA Sbjct: 210 VMSGDSDVADAVSEAGVIILPSPRDGHEGESMEDPDVLE----PEAALLKWPSKPGIPRSELFDPEDSWYDEPPEGFSLTLSPFATMWMAIFAWISSSSLAYIYGRDESFHEEYLSVNGREYSQKIIMGDGHSSAIKQTLSGCLARTFPALVADLRLRIPVSTLEKGLEGLLNTMSFIDPLPAFKVKQWQVITVLFLDALSVCRIPALTPHMTNRTMLLRKVLDGAQISAEEYEVMKDFLMPLGRAPQFSSQSGA 460
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: M5W7B5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002134mg PE=4 SV=1) HSP 1 Score: 387.882 bits (995), Expect = 1.005e-124 Identity = 186/255 (72.94%), Postives = 217/255 (85.10%), Query Frame = -2 Query: 391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155 VASG+SDV+ AVS AG+IILP P D+EE E++D LE+ E+ P+ WP KPGIP SD FDPEDSWFDAPPEGFS+TLS FATMWN+LF WITSS+LAYIYGRDE+FHEE+LSVNGREYP KIVL GRSSEIK+TL +RALP +V+ LRLP PIS+LEQGMGR+L+TMSF++A+PAFRMKQWQV+VLL ++ LSVCRIPALTPHMTN RML +KVL+ QIS E+YE+MKDLIIPLGRAP FSAQSGA Sbjct: 462 VASGESDVSGAVSGAGIIILPRPDGLDEEEPTEDVDMLES----EQAPL-WPRKPGIPCSDLFDPEDSWFDAPPEGFSVTLSPFATMWNSLFTWITSSTLAYIYGRDESFHEEFLSVNGREYPPKIVLAGGRSSEIKKTLDESFARALPGVVSELRLPTPISSLEQGMGRMLNTMSFIDAIPAFRMKQWQVIVLLFLEGLSVCRIPALTPHMTNRRMLFYKVLENTQISAEQYELMKDLIIPLGRAPQFSAQSGA 711
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: A0A061GZ13_THECC (F2P16.20-like protein isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_042182 PE=4 SV=1) HSP 1 Score: 386.726 bits (992), Expect = 2.480e-124 Identity = 188/230 (81.74%), Postives = 199/230 (86.52%), Query Frame = -2 Query: 466 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISL 1155 VASGDSDV DAV E DKEE +E+ D LE PE PVKWP KPGIP SD F+PEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDE+FHEEYLS+NGREYP+KI LRDGRSSEIKETLA CISRALPAIVT LRLPIPISTLEQGMG L+DT+SF+EALPAFRMKQWQV+VLL IDALSVCRIPALTPHMTNGRMLLHKVLDGAQIS+ Sbjct: 489 VASGDSDVTDAV-----------CEVDKEEPMEDGDMLE----PETAPVKWPKKPGIPHSDMFNPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDESFHEEYLSINGREYPRKIALRDGRSSEIKETLASCISRALPAIVTDLRLPIPISTLEQGMGHLIDTISFMEALPAFRMKQWQVIVLLFIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISM 703
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Match: V7BME8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G265900g PE=4 SV=1) HSP 1 Score: 384.03 bits (985), Expect = 3.262e-123 Identity = 179/255 (70.20%), Postives = 209/255 (81.96%), Query Frame = -2 Query: 391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155 VASGDSD DAVSEAG+IILP P +A +E +E+ D L+ D +KWP KPGI DFF+ +DSWFDAPPEGFSLTLS FA MWNA+F W+TS SLAYIYGRDE+FHEEYLSVNGREYP K+VL DGRSSEIK+T AGC++RA PA+V LRLPIPISTLEQGM LL+TMSFV+ALPAFR KQWQV+ LL +DALSVCRIP+L +MT+ R L HKVL G+QI +EEYE++KDL++PLGRAPH S QSGA Sbjct: 456 VASGDSDATDAVSEAGIIILPQPHDAVEEGTMEDADILQNDSVT----LKWPRKPGISDIDFFESDDSWFDAPPEGFSLTLSPFANMWNAIFSWMTSYSLAYIYGRDESFHEEYLSVNGREYPCKVVLSDGRSSEIKQTFAGCLARAFPALVAGLRLPIPISTLEQGMACLLETMSFVDALPAFRTKQWQVVALLFVDALSVCRIPSLISYMTDRRALFHKVLSGSQIGMEEYEILKDLVVPLGRAPHISVQSGA 706
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy Swiss-Prot
Match: RPAP2_ARATH (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Arabidopsis thaliana GN=At5g26760 PE=2 SV=1) HSP 1 Score: 298.516 bits (763), Expect = 3.875e-92 Identity = 143/255 (56.08%), Postives = 197/255 (77.25%), Query Frame = -2 Query: 391 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEPEEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSAQSGA 1155 V+SG+SD +DA ++AG+I+LP + D+E E+ + + EP +KWP KPGIP SD FD + SWFD PPEGF+LTLS FA MW++LF W++SSSLAYIYG++E+ HEE+L VNG+EYP++I++ DG SSEIK+T+AGC++RALP +VT LRLPI IS LE+G+G LL+TMS A+P+FR+K+W V+VLL +DALSV RIP + P+++N K+L+G+ I EEYE MKD+++PLGR P F+ +SGA Sbjct: 487 VSSGNSDASDATAKAGIILLPSTHQLDEEVTEEHSEEEMTEEEPT--LLKWPNKPGIPDSDLFDRDQSWFDGPPEGFNLTLSNFAVMWDSLFGWVSSSSLAYIYGKEESAHEEFLLVNGKEYPRRIIMVDGLSSEIKQTIAGCLARALPRVVTHLRLPIAISELEKGLGSLLETMSLTGAVPSFRVKEWLVIVLLFLDALSVSRIPRIAPYISN----RDKILEGSGIGNEEYETMKDILLPLGRVPQFATRSGA 735
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy Swiss-Prot
Match: RPAP2_ORYSI (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Oryza sativa subsp. indica GN=OsI_18345 PE=3 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 1.870e-78 Identity = 132/254 (51.97%), Postives = 177/254 (69.69%), Query Frame = -2 Query: 403 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEP---EEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSA 1155 ++SG S+V DAVS+AG+IILP + + + D + E + G VKWP K + +D FD +DSW D PPEGFSLTLS+FATMW ALF W++ SSLAY+YG DE+ E+ L GRE PQK VL DG SSEI+ L C+ ALP +V+ LR+ IP+S LE +G LLDTMSFV+ALP+ R +QWQ++VL+L+DALS+ R+PAL P M++ + LL K+L+ AQ+S EEY+ M DL++P GR+ A Sbjct: 470 ISSGTSEVEDAVSKAGIIILPDMVNQQQYNNDYDNDKDAGENEIFEIDRGVVKWPKKTVLLDTDMFDVDDSWHDTPPEGFSLTLSSFATMWAALFGWVSRSSLAYVYGLDESSMEDLLIAGGRECPQKRVLNDGHSSEIRRALDTCVCNALPVLVSNLRMQIPVSKLEITLGYLLDTMSFVDALPSLRSRQWQLMVLVLLDALSLHRLPALAPIMSDSK-LLQKLLNSAQVSREEYDSMIDLLLPFGRSTQSQA 722
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy Swiss-Prot
Match: RPAP2_ORYSJ (Putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog OS=Oryza sativa subsp. japonica GN=Os05g0134300 PE=3 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 1.970e-78 Identity = 132/254 (51.97%), Postives = 177/254 (69.69%), Query Frame = -2 Query: 403 VASGDSDVNDAVSEAGLIILPHPLEADKEEKVENIDTLEADPEP---EEGPVKWPTKPGIPRSDFFDPEDSWFDAPPEGFSLTLSTFATMWNALFEWITSSSLAYIYGRDETFHEEYLSVNGREYPQKIVLRDGRSSEIKETLAGCISRALPAIVTALRLPIPISTLEQGMGRLLDTMSFVEALPAFRMKQWQVLVLLLIDALSVCRIPALTPHMTNGRMLLHKVLDGAQISLEEYEVMKDLIIPLGRAPHFSA 1155 ++SG S+V DAVS+AG+IILP + + + D + E + G VKWP K + +D FD +DSW D PPEGFSLTLS+FATMW ALF W++ SSLAY+YG DE+ E+ L GRE PQK VL DG SSEI+ L C+ ALP +V+ LR+ IP+S LE +G LLDTMSFV+ALP+ R +QWQ++VL+L+DALS+ R+PAL P M++ + LL K+L+ AQ+S EEY+ M DL++P GR+ A Sbjct: 470 ISSGTSEVEDAVSKAGIIILPDMVNQQQYNNDYDNDKDAGENEIFEIDRGVVKWPKKTVLLDTDMFDVDDSWHDTPPEGFSLTLSSFATMWAALFGWVSRSSLAYVYGLDESSMEDLLIAGGRECPQKRVLNDGHSSEIRRALDTCVCNALPVLVSNLRMQIPVSKLEITLGYLLDTMSFVDALPSLRSRQWQLMVLVLLDALSLHRLPALAPIMSDSK-LLQKLLNSAQVSREEYDSMIDLLLPFGRSTQSQA 722 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0006030 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0006030 ID=g.arboreum_cottongen_reftransV1_0006030; Name=g.arboreum_cottongen_reftransV1_0006030; organism=Gossypium arboreum; type=contig; length=1156bpback to top |