g.arboreum_cottongen_reftransV1_0015138, g.arboreum_cottongen_reftransV1_0015138 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A0D2RXD9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G099300 PE=4 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 4.518e-56 Identity = 93/101 (92.08%), Postives = 96/101 (95.05%), Query Frame = 1 Query: 1 GSNCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKPAWMNLQAHSEFLALELEDLVF 303 GSNCDHQLVFDLVNEALLEIN MSPEYFPNPFSFNSRISLV KGNNV QQVW+KVSKNLASQ +HDQSLDDIIARDLDKPAWMNLQA SEF+ALELEDLVF Sbjct: 663 GSNCDHQLVFDLVNEALLEINGMSPEYFPNPFSFNSRISLVPKGNNVVQQVWSKVSKNLASQPQHDQSLDDIIARDLDKPAWMNLQADSEFVALELEDLVF 763
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A061GX28_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_041843 PE=4 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 2.826e-42 Identity = 76/102 (74.51%), Postives = 84/102 (82.35%), Query Frame = 1 Query: 1 GSNCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKPA-WMNLQAHSEFLALELEDLVF 303 GSNCDHQLVFDLVNEALLEI E YFPNP+ FN R+ +LKGNNV Q+VWTKVSKNLASQ E DQSLDDI+A D K A WMNLQA +EF+ALELE+LVF Sbjct: 155 GSNCDHQLVFDLVNEALLEITEKPYIYFPNPYFFNRRLGPMLKGNNVLQEVWTKVSKNLASQPETDQSLDDIVAPDFAKDASWMNLQAEAEFVALELEELVF 256
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A061GW74_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_041612 PE=4 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 6.407e-35 Identity = 66/93 (70.97%), Postives = 73/93 (78.49%), Query Frame = 1 Query: 1 GSNCDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKPAWMNLQAHSEFLA 279 GSN D QLV+DLVNEA LE NE S YFP PFSFN RIS +LK NNV Q+ WTKVS+NLAS+ EHDQSLDDI+ARD K AWMN QA EF+A Sbjct: 766 GSNYDQQLVYDLVNEAFLESNEKSSIYFPKPFSFNCRISPMLKENNVLQETWTKVSRNLASRPEHDQSLDDIVARDFAKDAWMNPQAEEEFVA 858
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: V4RTS1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027797mg PE=4 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 3.039e-25 Identity = 52/99 (52.53%), Postives = 74/99 (74.75%), Query Frame = 1 Query: 10 CDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKP-AWMNLQAHSEFLALELEDLVF 303 CDHQL+FDL+NE LLE+NE S YFP FSFN R+ + KG+ + ++VW+++ L+ ++E D+SLDDI+A+DL K WMN + +E +ALELEDL+F Sbjct: 752 CDHQLLFDLINELLLEMNETSFTYFPRAFSFNHRMRPMPKGHRLIEEVWSRICYYLSFRSEADRSLDDIVAQDLTKGDGWMNHEFETECVALELEDLIF 850
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A067GBV6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002967mg PE=4 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 3.099e-25 Identity = 52/99 (52.53%), Postives = 74/99 (74.75%), Query Frame = 1 Query: 10 CDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKP-AWMNLQAHSEFLALELEDLVF 303 CDHQL+FDL+NE LLE+NE S YFP FSFN R+ + KG+ + ++VW+++ L+ ++E D+SLDDI+A+DL K WMN + +E +ALELEDL+F Sbjct: 752 CDHQLLFDLINELLLEMNETSFTYFPRAFSFNHRMRPMPKGHRLIEEVWSRICYYLSFRSEADRSLDDIVAQDLTKGDGWMNHEFETECVALELEDLIF 850
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A067GBH7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g002967mg PE=4 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 3.134e-25 Identity = 52/99 (52.53%), Postives = 74/99 (74.75%), Query Frame = 1 Query: 10 CDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDKP-AWMNLQAHSEFLALELEDLVF 303 CDHQL+FDL+NE LLE+NE S YFP FSFN R+ + KG+ + ++VW+++ L+ ++E D+SLDDI+A+DL K WMN + +E +ALELEDL+F Sbjct: 753 CDHQLLFDLINELLLEMNETSFTYFPRAFSFNHRMRPMPKGHRLIEEVWSRICYYLSFRSEADRSLDDIVAQDLTKGDGWMNHEFETECVALELEDLIF 851
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A072VCX1_MEDTR (GTP-binding protein Obg/CgtA protein OS=Medicago truncatula GN=MTR_2g096870 PE=4 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.066e-24 Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 1 Query: 10 CDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303 CDHQL+F+LVNE L +I E SP YFP PF+FN ++ + KGN + ++VW VS L + E DQ+LDD++ RDL K WMNLQ E ++LELE+++ Sbjct: 584 CDHQLLFNLVNEVLFQIYENSPTYFPKPFAFNYKLKPMPKGNYLVKEVWDSVSSYLRLRPELDQTLDDVVGRDLTKGSGWMNLQQEEECVSLELEEMII 682
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A072VCE5_MEDTR (GTP-binding protein Obg/CgtA protein OS=Medicago truncatula GN=MTR_2g096870 PE=4 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.143e-24 Identity = 50/99 (50.51%), Postives = 69/99 (69.70%), Query Frame = 1 Query: 10 CDHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLASQAEHDQSLDDIIARDLDK-PAWMNLQAHSEFLALELEDLVF 303 CDHQL+F+LVNE L +I E SP YFP PF+FN ++ + KGN + ++VW VS L + E DQ+LDD++ RDL K WMNLQ E ++LELE+++ Sbjct: 622 CDHQLLFNLVNEVLFQIYENSPTYFPKPFAFNYKLKPMPKGNYLVKEVWDSVSSYLRLRPELDQTLDDVVGRDLTKGSGWMNLQQEEECVSLELEEMII 720
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A0D2QSX5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G132000 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.565e-24 Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 1 Query: 13 DHQLVFDLVNEALLEINEMSPEY-FPNPFSFNSRISLVLKGNNVF-QQVWTKVSKNLASQAEHDQSLDDIIARDLDKPAWMNLQAHSEFLALELEDLVF 303 DHQLVFDLVNEAL+ ++E + + FP PF N I L+ KGN V Q+VW VS N+ Q EHD SLDDI+ RD++K AWM LQ +F+ALEL++LVF Sbjct: 409 DHQLVFDLVNEALVGMSEKACVHKFPKPF--NRGIGLMFKGNAVLLQEVWRYVSGNMGFQQEHDGSLDDIVGRDMEKDAWMFLQGEDDFVALELQELVF 505
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Match: A0A0D2RLZ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G132000 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.656e-24 Identity = 56/99 (56.57%), Postives = 71/99 (71.72%), Query Frame = 1 Query: 13 DHQLVFDLVNEALLEINEMSPEY-FPNPFSFNSRISLVLKGNNVF-QQVWTKVSKNLASQAEHDQSLDDIIARDLDKPAWMNLQAHSEFLALELEDLVF 303 DHQLVFDLVNEAL+ ++E + + FP PF N I L+ KGN V Q+VW VS N+ Q EHD SLDDI+ RD++K AWM LQ +F+ALEL++LVF Sbjct: 414 DHQLVFDLVNEALVGMSEKACVHKFPKPF--NRGIGLMFKGNAVLLQEVWRYVSGNMGFQQEHDGSLDDIVGRDMEKDAWMFLQGEDDFVALELQELVF 510
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy Swiss-Prot
Match: TRM32_ARATH (Protein TRM32 OS=Arabidopsis thaliana GN=TRM32 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.636e-16 Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 1 Query: 13 DHQLVFDLVNEALLEINEMSPEYFPNPFSFNSRISLVLKGNNVFQQVWTKVSKNLAS-QAE-HDQSLDDIIARDL--DKPAWMNLQAHSEFLALELEDLVF 303 D +L+FDLVNEA++E S YFP F + G +VW +V +L+ AE D+SLDDI+ RDL WMNLQ SE+L LELEDL+F Sbjct: 450 DKELLFDLVNEAIVETQNHSQIYFPKTFPY---------GKRYLDEVWGRVEWSLSGLGAENRDRSLDDIVGRDLLTKSDGWMNLQGESEWLTLELEDLIF 541 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0015138 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0015138 ID=g.arboreum_cottongen_reftransV1_0015138; Name=g.arboreum_cottongen_reftransV1_0015138; organism=Gossypium arboreum; type=contig; length=303bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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