g.arboreum_cottongen_reftransV1_0005970, g.arboreum_cottongen_reftransV1_0005970 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0B0NZG4_GOSAR (Receptor-like protein kinase HSL1 OS=Gossypium arboreum GN=F383_05889 PE=4 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 2.562e-55 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = -3 Query: 1 MSKTRXXXXXXXXXXXTVIYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 372 MSKTRFTFLFFIFFFITVIYSQSINHNERTLLLNVKQQLGNPPSISSWNSSSSPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY Sbjct: 1 MSKTRFTFLFFIFFFITVIYSQSINHNERTLLLNVKQQLGNPPSISSWNSSSSPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 124
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0D2PTU5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G026000 PE=4 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 1.004e-52 Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = -3 Query: 1 MSKTRXXXXXXXXXXXTVIYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 372 MSKTRFTFLFFIFFFITVIYSQS+NHNERTLLLNVKQQL NPPSISSWNSSSSPCDWPEIICTAGSVT LHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY Sbjct: 1 MSKTRFTFLFFIFFFITVIYSQSVNHNERTLLLNVKQQLDNPPSISSWNSSSSPCDWPEIICTAGSVTRLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 124
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0D2Q963_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G048200 PE=4 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.050e-32 Identity = 79/106 (74.53%), Postives = 89/106 (83.96%), Query Frame = -3 Query: 1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318 + SQ IN ER +LLN KQQLGNPP + SWNSSSSPCDWPEI CTA SVT +HLRDKNI T IP +ICDLKNLTFLDL+ N+IPGEFP+ LYNCSKLQ L++SQNY Sbjct: 20 VTSQDINA-ERDVLLNFKQQLGNPPFLQSWNSSSSPCDWPEINCTANSVTEVHLRDKNITTPIPSTICDLKNLTFLDLAFNYIPGEFPA-LYNCSKLQTLDLSQNY 123
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0D2TJM0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G048200 PE=4 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.061e-32 Identity = 79/106 (74.53%), Postives = 89/106 (83.96%), Query Frame = -3 Query: 1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318 + SQ IN ER +LLN KQQLGNPP + SWNSSSSPCDWPEI CTA SVT +HLRDKNI T IP +ICDLKNLTFLDL+ N+IPGEFP+ LYNCSKLQ L++SQNY Sbjct: 20 VTSQDINA-ERDVLLNFKQQLGNPPFLQSWNSSSSPCDWPEINCTANSVTEVHLRDKNITTPIPSTICDLKNLTFLDLAFNYIPGEFPA-LYNCSKLQTLDLSQNY 123
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A067GMK7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001706mg PE=4 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.728e-30 Identity = 73/106 (68.87%), Postives = 84/106 (79.25%), Query Frame = -3 Query: 1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318 + QS N ERT+LLN+KQQLGNPPS+ SW S+SSPCDWPEI CT SVTG+ LR K+I IPP ICDLKNLT +DLS N IPGEFP LYNC+KLQ L++SQNY Sbjct: 27 VIPQSPNTEERTILLNLKQQLGNPPSLQSWTSTSSPCDWPEITCTFNSVTGISLRHKDITQKIPPIICDLKNLTTIDLSSNSIPGEFPEFLYNCTKLQNLDLSQNY 132
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A067GX52_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g001706mg PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.746e-30 Identity = 73/106 (68.87%), Postives = 84/106 (79.25%), Query Frame = -3 Query: 1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318 + QS N ERT+LLN+KQQLGNPPS+ SW S+SSPCDWPEI CT SVTG+ LR K+I IPP ICDLKNLT +DLS N IPGEFP LYNC+KLQ L++SQNY Sbjct: 27 VIPQSPNTEERTILLNLKQQLGNPPSLQSWTSTSSPCDWPEITCTFNSVTGISLRHKDITQKIPPIICDLKNLTTIDLSSNSIPGEFPEFLYNCTKLQNLDLSQNY 132
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A0B0PIY8_GOSAR (Receptor-like protein kinase HSL1 OS=Gossypium arboreum GN=F383_03081 PE=4 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.838e-30 Identity = 76/106 (71.70%), Postives = 87/106 (82.08%), Query Frame = -3 Query: 1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318 + SQ IN ER +LLN KQ+LGNPP + SWNSSSSPCDWPEI CTA SVT +HL DKNI T IP +ICDLKNLT LDL+ N+IPGEFP+ LYNCSKLQ L++SQNY Sbjct: 20 VISQDINA-ERDVLLNFKQRLGNPPFLQSWNSSSSPCDWPEINCTANSVTEVHLHDKNITTPIPSTICDLKNLTLLDLAFNYIPGEFPA-LYNCSKLQTLDLSQNY 123
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: B9INH9_POPTR (Leucine-rich repeat family protein OS=Populus trichocarpa GN=POPTR_0018s04880g PE=4 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 9.682e-28 Identity = 68/106 (64.15%), Postives = 86/106 (81.13%), Query Frame = -3 Query: 1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318 + SQ +N E+T+LLN+KQQLGNP SI SWNSSSSPC+WP++ C G+VTGL L +KNI TIP S+CDLKNLT+L+L+ N+IPG FP LYNC KL+ L++SQNY Sbjct: 21 VISQDVNA-EKTILLNLKQQLGNPSSIQSWNSSSSPCEWPDVYCVEGAVTGLDLGNKNITQTIPASVCDLKNLTYLNLNWNYIPGGFPKLLYNCKKLEELDLSQNY 125
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: B9RS14_RICCO (Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0801630 PE=4 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.074e-27 Identity = 68/107 (63.55%), Postives = 83/107 (77.57%), Query Frame = -3 Query: 1 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTA-GSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQNY 318 + SQ N E+++LLN+KQQLGNPPS+ SW +S+SPC WPEI C+ GSVT L LRDKNI IP ICDLKNLT LDL+ N+IPG FP+ LYNCS L+ L++SQNY Sbjct: 27 VISQITNTQEQSILLNIKQQLGNPPSLQSWTTSTSPCTWPEISCSDDGSVTALGLRDKNITVAIPARICDLKNLTVLDLAYNYIPGGFPTFLYNCSSLERLDLSQNY 133
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Match: A0A061GIW0_THECC (Kinase family protein with leucine-rich repeat domain, putative OS=Theobroma cacao GN=TCM_037228 PE=4 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.217e-27 Identity = 73/105 (69.52%), Postives = 83/105 (79.05%), Query Frame = -3 Query: 4 IYSQSINHNERTLLLNVKQQLGNXXXXXXXXXXXXPCDWPEIICTAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 318 + SQ IN ERT+LLN+K+QLGNPPS+ WNSSSSPCDW EI CT SVT + LR I IPP+ICDLKNL LDLS N IPGEFP+TLYNCSKL+YL+ISQN Sbjct: 20 VISQDIN-TERTVLLNLKRQLGNPPSLGHWNSSSSPCDWQEIGCTNNSVTAVILRKIPITVRIPPTICDLKNLIGLDLSFNMIPGEFPTTLYNCSKLKYLDISQN 123
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: Y1743_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=2 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 2.334e-9 Identity = 32/71 (45.07%), Postives = 40/71 (56.34%), Query Frame = -3 Query: 4 CDWPEIICT--AGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210 C WP IICT VTG++L D I + + L LT+LDLS N I GE P L C L++LN+S N Sbjct: 75 CQWPGIICTPQRSRVTGINLTDSTISGPLFKNFSALTELTYLDLSRNTIEGEIPDDLSRCHNLKHLNLSHN 145
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=1 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 1.594e-7 Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = -3 Query: 4 CDWPEIIC--TAGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210 C W + C + SV L+L N+ I P+I DL+NL +DL N + G+ P + NC+ L YL++S+N Sbjct: 59 CSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSEN 129
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: Y5694_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 4.648e-7 Identity = 31/72 (43.06%), Postives = 39/72 (54.17%), Query Frame = -3 Query: 4 CDWPEIICTAGS---VTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210 C+W I CT V+ ++L+ N+ I SICDL LT LDLSLNF P L C L+ LN+S N Sbjct: 62 CNWTGITCTRAPTLYVSSINLQSLNLSGEISDSICDLPYLTHLDLSLNFFNQPIPLQLSRCVTLETLNLSSN 133
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 8.074e-7 Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = -3 Query: 4 CDWPEIICT-AGSVTGLHLRDKNIMTTIPPSICDLKNLTFLDLSLNFIPGEFPSTLYNCSKLQYLNISQN 210 C+W I C + +V L+ + + P I +LK+L LDLS N G PSTL NC+KL L++S+N Sbjct: 64 CNWFGITCDDSKNVASLNFTRSRVSGQLGPEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLATLDLSEN 133 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0005970 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 4
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0005970 ID=g.arboreum_cottongen_reftransV1_0005970; Name=g.arboreum_cottongen_reftransV1_0005970; organism=Gossypium arboreum; type=contig; length=491bpback to top |