g.arboreum_cottongen_reftransV1_0013229, g.arboreum_cottongen_reftransV1_0013229 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0013229
Unique Nameg.arboreum_cottongen_reftransV1_0013229
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length429
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.arboreum_cottongen_reftransV1_0013229:1..429 .
Chr12:26035955..26036383 +
Homology
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A0D2S1W4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G121700 PE=4 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 3.819e-91
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 1
Query:    1 SDSLATVSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
            SDSLATVS+GPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQ+DVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT
Sbjct:   11 SDSLATVSNGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQDDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 153          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A061E5J0_THECC (Glycine-rich protein, putative isoform 2 OS=Theobroma cacao GN=TCM_010013 PE=4 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.779e-71
Identity = 114/135 (84.44%), Postives = 123/135 (91.11%), Query Frame = 1
Query:   25 DGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
            +GPVL+ INKRLRALRKKYNRILQMEESVSQGK LNKEQE+VLRSKP VSALIDELEKLRQPLSSAVSEEISLALQ QT+   ET S+AQ D+TE QEQ PN PDHA+EDLLNLLYFGS+FDVKSQ+DFTSTMLT
Sbjct:   20 EGPVLNLINKRLRALRKKYNRILQMEESVSQGKPLNKEQEEVLRSKPAVSALIDELEKLRQPLSSAVSEEISLALQCQTIFPDETASEAQQDETEVQEQQPNEPDHAVEDLLNLLYFGSIFDVKSQNDFTSTMLT 154          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A061E5E8_THECC (Glycine-rich protein, putative isoform 1 OS=Theobroma cacao GN=TCM_010013 PE=4 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 5.699e-70
Identity = 114/135 (84.44%), Postives = 123/135 (91.11%), Query Frame = 1
Query:   25 DGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
            +GPVL+ INKRLRALRKKYNRILQMEESVSQGK LNKEQE+VLRSKP VSALIDELEKLRQPLSSAVSEEISLALQ QT+   ET S+AQ D+TE QEQ PN PDHA+EDLLNLLYFGS+FDVKSQ+DFTSTMLT
Sbjct:   20 EGPVLNLINKRLRALRKKYNRILQMEESVSQGKPLNKEQEEVLRSKPAVSALIDELEKLRQPLSSAVSEEISLALQCQTIFPDETASEAQQDETEVQEQQPNEPDHAVEDLLNLLYFGSIFDVKSQNDFTSTMLT 154          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A0D2QT66_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G346800 PE=4 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 7.927e-66
Identity = 112/136 (82.35%), Postives = 121/136 (88.97%), Query Frame = 1
Query:   22 SDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
            SDGPVLS INKR+RALRKKYNRILQMEESVSQGK LNKEQE+VLRSKP+VSALIDELEKLR PLSSAVSEEISLALQRQT+S+ ETTS+AQ  +  P E     PDHA+EDLLNLLYFGSLFDVKSQ+DFTS MLT
Sbjct:   20 SDGPVLSLINKRIRALRKKYNRILQMEESVSQGKPLNKEQEEVLRSKPSVSALIDELEKLRHPLSSAVSEEISLALQRQTISAEETTSEAQQQQQPPSE-----PDHAVEDLLNLLYFGSLFDVKSQNDFTSMMLT 150          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A0D2U003_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G346800 PE=4 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 5.075e-65
Identity = 112/136 (82.35%), Postives = 121/136 (88.97%), Query Frame = 1
Query:   22 SDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
            SDGPVLS INKR+RALRKKYNRILQMEESVSQGK LNKEQE+VLRSKP+VSALIDELEKLR PLSSAVSEEISLALQRQT+S+ ETTS+AQ  +  P E     PDHA+EDLLNLLYFGSLFDVKSQ+DFTS MLT
Sbjct:   20 SDGPVLSLINKRIRALRKKYNRILQMEESVSQGKPLNKEQEEVLRSKPSVSALIDELEKLRHPLSSAVSEEISLALQRQTISAEETTSEAQQQQQPPSE-----PDHAVEDLLNLLYFGSLFDVKSQNDFTSMMLT 150          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: W9R1K2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021067 PE=4 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.466e-54
Identity = 97/138 (70.29%), Postives = 113/138 (81.88%), Query Frame = 1
Query:   19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSS-SETTSQAQPDKTEPQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
            VSDGPVLS INKRLRALRKK NRI QMEE++SQGK +N+EQE+VLRSKP VSALIDELEKLRQP++ AV+EE+SLA+Q   VSS S+   Q +PD+ E     P+  +  +EDLLNLLYFGSLFDVK QSDFTSTMLT
Sbjct:    6 VSDGPVLSLINKRLRALRKKLNRITQMEEAISQGKPINREQEEVLRSKPGVSALIDELEKLRQPIADAVAEEVSLAVQLHQVSSLSDADRQEKPDEPETAVPEPDRREAEVEDLLNLLYFGSLFDVKPQSDFTSTMLT 143          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A0A0KVT4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604160 PE=4 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.220e-53
Identity = 102/142 (71.83%), Postives = 115/142 (80.99%), Query Frame = 1
Query:   19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQ-EQLPNVPD---HA-IEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
            V DGPVLS INKRLRALRKK+NRILQMEE++S GK +NKEQE+VLRSKP+V+ALIDELEKLRQPL+SAVSEEI+LA+QRQ  S S          TE + E   +V D   HA +EDLLNLLYFGSLFDVKSQSDFTSTMLT
Sbjct:    9 VIDGPVLSLINKRLRALRKKHNRILQMEEAISLGKPINKEQEEVLRSKPSVTALIDELEKLRQPLASAVSEEINLAVQRQQASVSSLPVSTDDSHTEVRDEDTSDVKDQSEHAVVEDLLNLLYFGSLFDVKSQSDFTSTMLT 150          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: A0A067JES6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21714 PE=4 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.634e-53
Identity = 96/144 (66.67%), Postives = 113/144 (78.47%), Query Frame = 1
Query:   19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQ-------EQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
             +DGPVLSFINKRLRALRKKYNRILQMEE++SQGK +NKEQEDVLRSKP+V A I+ELEKLRQPL++AVSEEI+LA+QR     S  ++ A PDK + +       E         +EDLLNLLYFGSLFDVKSQ+DFT+TMLT
Sbjct:    9 ATDGPVLSFINKRLRALRKKYNRILQMEEAISQGKPINKEQEDVLRSKPSVCAAIEELEKLRQPLATAVSEEIALAIQRHQ-QQSFVSNNAIPDKDDSEKTDCDSDEDTRGDGGSMVEDLLNLLYFGSLFDVKSQNDFTATMLT 151          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: Q9LFX8_ARATH (Putative uncharacterized protein At1g27090 OS=Arabidopsis thaliana GN=At1g27090 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.027e-52
Identity = 92/138 (66.67%), Postives = 110/138 (79.71%), Query Frame = 1
Query:   19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTEPQEQLPNVPDHA-IEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
             S+GPV+  INKRLRALRKKYNRI QMEES+SQGKTLNKEQE+VLRSKP V  LIDELEK+R PLS+AV+EEISLA Q    SS +TT+  Q + T+  +++    D A +EDL+N LYFGSLFDVKSQ++FTS MLT
Sbjct:    9 ASEGPVMGLINKRLRALRKKYNRITQMEESISQGKTLNKEQEEVLRSKPAVVILIDELEKIRAPLSAAVTEEISLATQLNRASSDQTTASEQKEVTDIPQEVSGGDDGAKLEDLVNFLYFGSLFDVKSQNEFTSIMLT 146          
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Match: D7KPK8_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_472693 PE=4 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.756e-51
Identity = 92/138 (66.67%), Postives = 108/138 (78.26%), Query Frame = 1
Query:   19 VSDGPVLSFINKRLRALRKKYNRILQMEESVSQGKTLNKEQEDVLRSKPTVSALIDELEKLRQPLSSAVSEEISLALQRQTVSSSETTSQAQPDKTE-PQEQLPNVPDHAIEDLLNLLYFGSLFDVKSQSDFTSTMLT 429
             S+GPV+  INKRLRALRKKYNRI QMEES+SQGKTLNKEQE+VLRSKP V  LI+ELEK+R PLS+AV+EEISLA Q     S +TT+  Q + T+ PQE         +EDL+NLLYFGSLFDVKSQ++FTS MLT
Sbjct:    9 ASEGPVMGLINKRLRALRKKYNRITQMEESISQGKTLNKEQEEVLRSKPAVVILIEELEKIRAPLSAAVAEEISLATQHNRAPSDQTTAPEQKEVTDIPQEVSGGDGGAKLEDLVNLLYFGSLFDVKSQNEFTSIMLT 146          
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0D2S1W4_GOSRA3.819e-9198.60Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061E5J0_THECC2.779e-7184.44Glycine-rich protein, putative isoform 2 OS=Theobr... [more]
A0A061E5E8_THECC5.699e-7084.44Glycine-rich protein, putative isoform 1 OS=Theobr... [more]
A0A0D2QT66_GOSRA7.927e-6682.35Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2U003_GOSRA5.075e-6582.35Uncharacterized protein OS=Gossypium raimondii GN=... [more]
W9R1K2_9ROSA3.466e-5470.29Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A0A0A0KVT4_CUCSA1.220e-5371.83Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
A0A067JES6_JATCU2.634e-5366.67Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
Q9LFX8_ARATH3.027e-5266.67Putative uncharacterized protein At1g27090 OS=Arab... [more]
D7KPK8_ARALL2.756e-5166.67Putative uncharacterized protein OS=Arabidopsis ly... [more]

Pages

back to top
BLAST of g.arboreum_cottongen_reftransV1_0013229 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37736:SF1GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MSD24coord: 1..111
NoneNo IPR availablePANTHERPTHR37736FAMILY NOT NAMEDcoord: 1..111

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0013229 ID=g.arboreum_cottongen_reftransV1_0013229; Name=g.arboreum_cottongen_reftransV1_0013229; organism=Gossypium arboreum; type=contig; length=429bp
TCCGACTCTCTAGCCACAGTTTCGGACGGCCCCGTCCTTAGCTTCATCAA
CAAACGCCTCCGTGCCCTACGCAAGAAATACAACCGCATTCTCCAAATGG
AAGAATCGGTCTCCCAAGGCAAAACTTTGAACAAAGAACAAGAAGATGTC
CTCCGTTCCAAACCCACCGTATCTGCCCTTATCGATGAACTCGAGAAGCT
TCGCCAGCCTCTTTCTTCCGCTGTCTCCGAAGAAATCTCACTCGCCTTAC
AGCGTCAAACCGTTTCATCATCAGAAACAACCTCTCAAGCCCAACCTGAC
AAGACTGAACCCCAAGAACAACTACCCAATGTCCCCGATCATGCCATTGA
GGATCTCCTCAATCTTCTCTATTTCGGGTCGTTGTTCGATGTCAAGTCTC
AGAGTGATTTTACCTCCACCATGTTGACG
back to top