g.arboreum_cottongen_reftransV1_0014341, g.arboreum_cottongen_reftransV1_0014341 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: A0A061GWI3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_041499 PE=4 SV=1) HSP 1 Score: 340.887 bits (873), Expect = 4.099e-115 Identity = 160/178 (89.89%), Postives = 169/178 (94.94%), Query Frame = -3 Query: 3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536 GPEPVDGFYVLVMVDSEIGL+LGDMAEE V +KFK TPVAKVSLI RQEHCSG TLYSTKAQFCDTGIVHD+LI+CSGEHEGLK+PVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWD +DWFFNP TGSAVF+FRTRSGLDSRLWLEEKLVQK QDRVEFSLLI+ACK+ Sbjct: 121 GPEPVDGFYVLVMVDSEIGLILGDMAEEAVIRKFKTTTPVAKVSLICRQEHCSGNTLYSTKAQFCDTGIVHDVLIKCSGEHEGLKHPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDVHDWFFNPATGSAVFMFRTRSGLDSRLWLEEKLVQKGQDRVEFSLLIYACKS 298
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: B9T5T5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1180700 PE=4 SV=1) HSP 1 Score: 322.398 bits (825), Expect = 7.605e-108 Identity = 146/178 (82.02%), Postives = 165/178 (92.70%), Query Frame = -3 Query: 3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536 GP PVDGFYVLVMVDSEIGL+LGD+ +ET+ KK K TPVAK SLISRQEHCSG TLY+TKAQFCD G+ H+ILI+CSGE+EGLKYPVLSVCIDKK VIRVKRLQWNFRGNQ+IF+DGLLVDLMWD +DWF+NP +GSAVF+FRTRSG+DSRLWLEEKL+QKDQ+RVEFSLLI+ACKN Sbjct: 121 GPAPVDGFYVLVMVDSEIGLILGDIGDETINKKLKVTTPVAKTSLISRQEHCSGNTLYATKAQFCDKGMQHEILIKCSGENEGLKYPVLSVCIDKKMVIRVKRLQWNFRGNQSIFLDGLLVDLMWDVHDWFYNPASGSAVFMFRTRSGMDSRLWLEEKLLQKDQERVEFSLLIYACKN 298
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: B9MYJ2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s19910g PE=4 SV=1) HSP 1 Score: 319.701 bits (818), Expect = 1.038e-106 Identity = 148/179 (82.68%), Postives = 171/179 (95.53%), Query Frame = -3 Query: 3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFK-NATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536 GPEPV+GFYVLVMVDSEIGL+LGD+ EET+TKKFK ++TP+AKV+LISRQEHCSG TLY+TKAQFCDTGI HDI+IRCSGE+EGLK+PVLSVCIDKKTVIRVKRLQWNFRGNQTIF++GLLVDL+WD +DWF+NP +G AVF+FRTRSG+DSRLWLEEKLVQKDQ+RVEFSLLI+A K+ Sbjct: 121 GPEPVEGFYVLVMVDSEIGLILGDVGEETLTKKFKTSSTPIAKVTLISRQEHCSGNTLYATKAQFCDTGIQHDIVIRCSGENEGLKHPVLSVCIDKKTVIRVKRLQWNFRGNQTIFLEGLLVDLLWDVHDWFYNPGSGYAVFMFRTRSGMDSRLWLEEKLVQKDQERVEFSLLIYASKS 299
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: A0A0D2LXR8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G120000 PE=4 SV=1) HSP 1 Score: 317.775 bits (813), Expect = 2.384e-106 Identity = 152/178 (85.39%), Postives = 163/178 (91.57%), Query Frame = -3 Query: 3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536 GPEPV+GFYVLVMVDSEI LVLGD+ EETVT+KFK TPVAKVSLISRQEHCSG TLYSTKAQF DTGIVHD+LIR GE+EGLK+PVLSV IDKKTVIRVKRLQWNFRGNQTIFVDGL VDLMWD +DWFF PVTGSA+F+FRTRSG DSRLWLEEKL+QKDQDR FSLLI+ACKN Sbjct: 99 GPEPVNGFYVLVMVDSEISLVLGDIDEETVTRKFKKKTPVAKVSLISRQEHCSGNTLYSTKAQFSDTGIVHDVLIRFGGENEGLKHPVLSVYIDKKTVIRVKRLQWNFRGNQTIFVDGLSVDLMWDVHDWFFKPVTGSAIFMFRTRSGFDSRLWLEEKLLQKDQDRHGFSLLIYACKN 276
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: A0A067DRK5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021977mg PE=4 SV=1) HSP 1 Score: 318.546 bits (815), Expect = 3.020e-106 Identity = 146/178 (82.02%), Postives = 165/178 (92.70%), Query Frame = -3 Query: 3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536 GPEPV+GFYVLVMVDSEIGL+LG++ E+ VTKK KN++ AKVSL+SR+EHCSG LYSTKAQFCDTGI HDILIRC GE+EGLK+PVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWD +DWFFNP +G AVF+FRTRSGLDSRLWLEEKL+QK+Q+ VEFSLLI+ACK+ Sbjct: 123 GPEPVEGFYVLVMVDSEIGLILGNLNEDIVTKKLKNSSSAAKVSLVSRREHCSGNALYSTKAQFCDTGIAHDILIRCGGENEGLKHPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDVHDWFFNPASGYAVFMFRTRSGLDSRLWLEEKLMQKEQESVEFSLLIYACKS 300
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: F6GW46_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01360 PE=4 SV=1) HSP 1 Score: 317.39 bits (812), Expect = 8.218e-106 Identity = 145/178 (81.46%), Postives = 164/178 (92.13%), Query Frame = -3 Query: 3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536 GPEPV+GFYVLV+VDSEIGL+LGD+AEE T+K K+ TPVAK SL+SR+EHCSG TLYSTKAQFCDTG HDILI+CSGE+EGLK+PVLSV IDKK VIRVKRLQWNFRGNQTIFVDGLLVDLMWD + WFFNP +G AVF+FRTRSG+DSRLWLEEKL+QKDQDR+EFSLLI+ACK+ Sbjct: 121 GPEPVEGFYVLVVVDSEIGLLLGDIAEEAATRKLKSGTPVAKASLVSRREHCSGNTLYSTKAQFCDTGTAHDILIKCSGENEGLKHPVLSVSIDKKVVIRVKRLQWNFRGNQTIFVDGLLVDLMWDVHGWFFNPASGYAVFMFRTRSGMDSRLWLEEKLLQKDQDRLEFSLLIYACKS 298
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: A0A0D2TG78_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G088000 PE=4 SV=1) HSP 1 Score: 314.309 bits (804), Expect = 1.554e-104 Identity = 146/178 (82.02%), Postives = 159/178 (89.33%), Query Frame = -3 Query: 3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536 GPEPV+GFYV+V VDSEIGL+LGD AEE + K+F + PVAK SL+SRQEHCSG TLYSTKAQFCDTGI HDILIRCSGEH LK+PVLSVCID KTVIRVKRLQWNFRGNQTIFVDGLLVDLMWD +DWFFNP GSAVF+FRTRSGLDSRLWLEEK V KD+D+VEFSLLI+A KN Sbjct: 122 GPEPVNGFYVIVTVDSEIGLILGDTAEEEINKRFTSTIPVAKSSLVSRQEHCSGNTLYSTKAQFCDTGISHDILIRCSGEHGDLKHPVLSVCIDNKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDVHDWFFNPAAGSAVFMFRTRSGLDSRLWLEEKWVHKDEDKVEFSLLIYAWKN 299
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: A0A067KQ06_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11263 PE=4 SV=1) HSP 1 Score: 313.153 bits (801), Expect = 3.963e-104 Identity = 144/179 (80.45%), Postives = 168/179 (93.85%), Query Frame = -3 Query: 3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSG-TTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536 GP PV+GFYVLVMVD+EIGLVLGD+ ET+TKK K +TPVAK SLIS+QEHCSG +TLY+TKAQFC+TGI+HDILI+CSGE+EGLKYPVLSVCID K VIRVKRLQWNFRGNQTIFVDGLLVDLMWD ++WF++P +GSAVF+FRTRSG+DSRLWLEEKLVQKD++R+EFSLLI+ACK+ Sbjct: 123 GPVPVEGFYVLVMVDNEIGLVLGDIEGETITKKLKTSTPVAKASLISKQEHCSGNSTLYATKAQFCETGILHDILIKCSGENEGLKYPVLSVCIDNKMVIRVKRLQWNFRGNQTIFVDGLLVDLMWDVHNWFYSPGSGSAVFMFRTRSGMDSRLWLEEKLVQKDEERIEFSLLIYACKS 301
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: A0A068UEI5_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_24 OS=Coffea canephora GN=GSCOC_T00024041001 PE=4 SV=1) HSP 1 Score: 310.457 bits (794), Expect = 4.253e-103 Identity = 142/177 (80.23%), Postives = 160/177 (90.40%), Query Frame = -3 Query: 6 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFKNATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACK 536 GPEP+DG+YVLV VDS++ L+LGDMAEE KK K+ TPVAK SL+SRQEH SG TLYSTKAQFCDTG HDILIRCSGE+EGLK+PVLSVCIDKK V RVKRLQWNFRGNQTIF+DGLLVDLMWD +DWFFNP +G AVF+FRTRSG+DSRLWLEEKLVQKDQD+V+FSLLI+AC+ Sbjct: 122 GPEPIDGYYVLVTVDSQLCLILGDMAEEASLKKLKSGTPVAKFSLVSRQEHFSGNTLYSTKAQFCDTGTCHDILIRCSGENEGLKHPVLSVCIDKKMVTRVKRLQWNFRGNQTIFLDGLLVDLMWDVHDWFFNPASGYAVFMFRTRSGMDSRLWLEEKLVQKDQDKVDFSLLIYACR 298
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Match: B9HQU0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s15050g PE=4 SV=2) HSP 1 Score: 308.531 bits (789), Expect = 2.348e-102 Identity = 144/179 (80.45%), Postives = 168/179 (93.85%), Query Frame = -3 Query: 3 GPEPVDGFYVLVMVDSEIGLVLGDMAEETVTKKFK-NATPVAKVSLISRQEHCSGTTLYSTKAQFCDTGIVHDILIRCSGEHEGLKYPVLSVCIDKKTVIRVKRLQWNFRGNQTIFVDGLLVDLMWDAYDWFFNPVTGSAVFLFRTRSGLDSRLWLEEKLVQKDQDRVEFSLLIHACKN 536 GPEPV+GFYVLVMVDSEIGL+LGD+ EET+TK+FK ++T VAKVSLISRQEHCSG T+Y+TKAQFC+TGI HDI+I+CSGE EGLK+PVLSV IDKKTVIRVKRLQWNFRGNQT+F+DGLLVDL+WD +DWFFNP +G AVF+FRTRSG+DSRLWLEEKLVQK+Q+RVEFSLLI+A K+ Sbjct: 121 GPEPVEGFYVLVMVDSEIGLILGDVGEETLTKRFKTSSTSVAKVSLISRQEHCSGNTIYATKAQFCETGIQHDIVIKCSGETEGLKHPVLSVYIDKKTVIRVKRLQWNFRGNQTVFLDGLLVDLLWDVHDWFFNPGSGYAVFMFRTRSGMDSRLWLEEKLVQKEQERVEFSLLIYASKS 299 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0014341 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0014341 ID=g.arboreum_cottongen_reftransV1_0014341; Name=g.arboreum_cottongen_reftransV1_0014341; organism=Gossypium arboreum; type=contig; length=538bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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