g.arboreum_cottongen_reftransV1_0002516, g.arboreum_cottongen_reftransV1_0002516 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0B0PDB1_GOSAR (Argininosuccinate lyase OS=Gossypium arboreum GN=F383_28306 PE=4 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 2.932e-51 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 3 Query: 15 MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAYMREKGNKD 302 MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWNELEKENKEFFEAYTRNRDQRATDMEKRGRIQFRVNAYMREKGNKD Sbjct: 1 MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWNELEKENKEFFEAYTRNRDQRATDMEKRGRIQFRVNAYMREKGNKD 96
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0D2U0P9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G423500 PE=4 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.674e-49 Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 3 Query: 15 MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAYMREKGNKD 302 MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEAL+KHAS+KPVITSTVWNELEKENKEFFEAYTRNRDQRATDMEKR RIQFRVNAYMREKGNKD Sbjct: 1 MNMDDSSASYIHMVHHLIEECLIFNMSKEECMEALAKHASIKPVITSTVWNELEKENKEFFEAYTRNRDQRATDMEKRQRIQFRVNAYMREKGNKD 96
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A061EZD3_THECC (Plant protein 1589 of Uncharacterized protein function OS=Theobroma cacao GN=TCM_022011 PE=4 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 1.351e-35 Identity = 77/92 (83.70%), Postives = 85/92 (92.39%), Query Frame = 3 Query: 27 DSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAYMREKGNKD 302 DSSASYIHMVHHLIEECLIFNMSKEEC+EALSKHA++KPVITSTVWNELEKENKEFFEAYTR RDQRAT++EKR RIQ R+ A MRE +K+ Sbjct: 4 DSSASYIHMVHHLIEECLIFNMSKEECIEALSKHANIKPVITSTVWNELEKENKEFFEAYTRGRDQRATEIEKRQRIQSRLKASMRETIDKN 95
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0B0PCA0_GOSAR (Argininosuccinate lyase OS=Gossypium arboreum GN=F383_27307 PE=4 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.202e-33 Identity = 72/89 (80.90%), Postives = 82/89 (92.13%), Query Frame = 3 Query: 21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAYMRE 287 M DSSASYIHMVHHLIEECLIFNMSKEECMEALSKHA+VKPVITSTVWNEL+KENKEFFEAY + RDQRA ++E+R RIQ ++NA ++E Sbjct: 1 MGDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHANVKPVITSTVWNELQKENKEFFEAYIKGRDQRAIEVEQRQRIQTQLNASIKE 89
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0B0PFW8_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_05682 PE=4 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.406e-31 Identity = 68/86 (79.07%), Postives = 79/86 (91.86%), Query Frame = 3 Query: 21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAY 278 M DSSASYI++V HLIEECLIFNMSKEECMEALSKHA++KPVITSTVW+ELEKENKEFFEAY + RDQRAT++EKR RIQ ++N + Sbjct: 1 MGDSSASYINLVQHLIEECLIFNMSKEECMEALSKHANIKPVITSTVWDELEKENKEFFEAYIKGRDQRATEIEKRQRIQKKLNTF 86
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0D2NDW8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G250100 PE=4 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.950e-30 Identity = 67/86 (77.91%), Postives = 78/86 (90.70%), Query Frame = 3 Query: 21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAY 278 M DSSASYI++V HLIEECLIFNMSKEECMEALS HA++KPVITSTVW+ELEKENKEFFEAY + RDQRAT++EKR RIQ ++N + Sbjct: 1 MGDSSASYINLVQHLIEECLIFNMSKEECMEALSMHANIKPVITSTVWDELEKENKEFFEAYLKGRDQRATEIEKRQRIQKKLNTF 86
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A0D2PKI8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G375100 PE=4 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 7.840e-30 Identity = 68/89 (76.40%), Postives = 79/89 (88.76%), Query Frame = 3 Query: 21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQFRVNAYMRE 287 M D SASYIHMVHHLIEECLIFNMSKEECMEALSKHA++KPVITSTVWNEL+KEN EFFEAYT+ RDQRA ++E+R + Q +NA ++E Sbjct: 1 MGDPSASYIHMVHHLIEECLIFNMSKEECMEALSKHANIKPVITSTVWNELQKENNEFFEAYTKGRDQRANELEQR-QTQL-INASIKE 87
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A067DMN1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034486mg PE=4 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 7.864e-29 Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 3 Query: 21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQ 260 MDDSSASYIH+VHHLIEECL+FNMSKEECMEALSKHA++KPVITSTVW ELEKENKEFFEAY R +RAT ME R RI+ Sbjct: 1 MDDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNAERATVMETRERIE 80
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: V4S4C7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013206mg PE=4 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 7.864e-29 Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 3 Query: 21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQ 260 MDDSSASYIH+VHHLIEECL+FNMSKEECMEALSKHA++KPVITSTVW ELEKENKEFFEAY R +RAT ME R RI+ Sbjct: 1 MDDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNAERATVMETRERIE 80
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Match: A0A067D251_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034494mg PE=4 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 8.822e-29 Identity = 66/80 (82.50%), Postives = 72/80 (90.00%), Query Frame = 3 Query: 21 MDDSSASYIHMVHHLIEECLIFNMSKEECMEALSKHASVKPVITSTVWXXXXXXXXXXXXAYTRNRDQRATDMEKRGRIQ 260 MDDSSASYIH+VHHLIEECL+FNMSKEECMEALSKHA++KPVITSTVW ELEKENKEFFEAY R +RAT ME R RI+ Sbjct: 1 MDDSSASYIHLVHHLIEECLVFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYARKNAERATVMETRERIE 80 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0002516 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0002516 ID=g.arboreum_cottongen_reftransV1_0002516; Name=g.arboreum_cottongen_reftransV1_0002516; organism=Gossypium arboreum; type=contig; length=822bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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