g.arboreum_cottongen_reftransV1_0011262, g.arboreum_cottongen_reftransV1_0011262 (contig) Gossypium arboreum

Overview


Name	g.arboreum_cottongen_reftransV1_0011262
Unique Name	g.arboreum_cottongen_reftransV1_0011262
Type	contig
Organism	Gossypium arboreum (Tree cotton)
Sequence length	806

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr4	chromosome	g.arboreum_cottongen_reftransV1_0011262:1..806 . Chr4:73558366..73559171 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium arboreum CottonGen RefTrans V1	2016-11-14
InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1	2016-11-14
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL	2016-11-15
Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt	2016-11-15

Homology

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0B0NAB2_GOSAR (FACT complex subunit SPT16-like protein OS=Gossypium arboreum GN=F383_11290 PE=4 SV=1)

HSP 1 Score: 526.939 bits (1356), Expect = 1.909e-176
Identity = 264/268 (98.51%), Postives = 268/268 (100.00%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVP+KASAFIVPTSSCLVELVETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTD+KYYESRLNLNWRQILKTITDDPQ
Sbjct:  673 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELVETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPQ 940

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0D2W816_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G209300 PE=4 SV=1)

HSP 1 Score: 525.398 bits (1352), Expect = 6.212e-176
Identity = 263/268 (98.13%), Postives = 267/268 (99.63%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRLPDLWIRPVFGGRGRKIPGTLE HVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVP+KASAFIVPTSSCLVELVETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTD+KYYESRLNLNWRQILKTITDDPQ
Sbjct:  673 FKPIRLPDLWIRPVFGGRGRKIPGTLEAHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPHKASAFIVPTSSCLVELVETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPQ 940

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0B0MRE4_GOSAR (FACT complex subunit SPT16-like protein OS=Gossypium arboreum GN=F383_00943 PE=4 SV=1)

HSP 1 Score: 525.398 bits (1352), Expect = 7.168e-176
Identity = 264/268 (98.51%), Postives = 266/268 (99.25%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRPVFGGRGRKIPGTLE HVNGFRYSTTRADERVD+MYGNIKHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  674 FKPIRLSDLWIRPVFGGRGRKIPGTLEAHVNGFRYSTTRADERVDIMYGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 941

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A0D2TPK9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G308600 PE=4 SV=1)

HSP 1 Score: 524.242 bits (1349), Expect = 2.187e-175
Identity = 263/268 (98.13%), Postives = 266/268 (99.25%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRPVFGGRGRKIPGTLE HVNGFRYSTTRADERVD+MYGNIKHAFFQPAEKEMITL+HFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  674 FKPIRLSDLWIRPVFGGRGRKIPGTLEAHVNGFRYSTTRADERVDIMYGNIKHAFFQPAEKEMITLVHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 941

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A061F3Y4_THECC (Global transcription factor C isoform 1 OS=Theobroma cacao GN=TCM_026818 PE=4 SV=1)

HSP 1 Score: 522.316 bits (1344), Expect = 1.069e-174
Identity = 261/268 (97.39%), Postives = 265/268 (98.88%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRP FGGRGRKIPGTLE HVNGFRYSTTRADERVD+MYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTD+KYYESRLNLNWRQILKTITDDPQ
Sbjct:  674 FKPIRLSDLWIRPPFGGRGRKIPGTLEVHVNGFRYSTTRADERVDIMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPQ 941

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: W9RSN6_9ROSA (FACT complex subunit SPT16 OS=Morus notabilis GN=L484_005993 PE=4 SV=1)

HSP 1 Score: 509.22 bits (1310), Expect = 1.300e-169
Identity = 252/268 (94.03%), Postives = 263/268 (98.13%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRLPDLWIRPVFGGRGRKIPGTLE HVNGFRYSTTR DERVD+M+ NIKHAFFQPAE EMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINM+FQSFVNRVNDLWGQPQF+GLDLEFDQPLRELGFHGVP+K+SAFIVPTS+CLVEL+ETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPST+LDGI+EWLDTTDIKYYESRLNLNWRQILK ITDDPQ
Sbjct:  676 FKPIRLPDLWIRPVFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDIMFANIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMNFQSFVNRVNDLWGQPQFSGLDLEFDQPLRELGFHGVPFKSSAFIVPTSTCLVELIETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTALDGIEEWLDTTDIKYYESRLNLNWRQILKAITDDPQ 943

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A059AEK2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01613 PE=4 SV=1)

HSP 1 Score: 508.064 bits (1307), Expect = 1.732e-169
Identity = 252/268 (94.03%), Postives = 262/268 (97.76%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
             KPI+L DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+++GNIKHAFFQPAEKEMITLLHFHLHNHIMVGN+KTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQ+FVNRVNDLWGQPQF GLDLEFDQPLRELGFHGVPYKASAFIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  675 MKPIKLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDILFGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNRKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQNFVNRVNDLWGQPQFGGLDLEFDQPLRELGFHGVPYKASAFIVPTSTCLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 942

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A059AEV5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01613 PE=4 SV=1)

HSP 1 Score: 508.834 bits (1309), Expect = 3.561e-169
Identity = 252/268 (94.03%), Postives = 262/268 (97.76%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
             KPI+L DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+++GNIKHAFFQPAEKEMITLLHFHLHNHIMVGN+KTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQ+FVNRVNDLWGQPQF GLDLEFDQPLRELGFHGVPYKASAFIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  675 MKPIKLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDILFGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNRKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQNFVNRVNDLWGQPQFGGLDLEFDQPLRELGFHGVPYKASAFIVPTSTCLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 942

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: M5W3N0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000613mg PE=4 SV=1)

HSP 1 Score: 508.064 bits (1307), Expect = 3.757e-169
Identity = 253/268 (94.40%), Postives = 261/268 (97.39%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKPIRL DLWIRPVFGGRGRKIPGTLE H NGFR+STTR DERVDVM+ NIKHAFFQPAE EMITLLHFHLHNHIMVG KKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYK+SAFIVPTS+CLVEL+ETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPST+LDGIKEWLDTTD+KYYESRLNLNWRQILKTITDDPQ
Sbjct:  680 FKPIRLSDLWIRPVFGGRGRKIPGTLEAHANGFRFSTTRQDERVDVMFPNIKHAFFQPAENEMITLLHFHLHNHIMVGTKKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKSSAFIVPTSTCLVELIETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTALDGIKEWLDTTDLKYYESRLNLNWRQILKTITDDPQ 947

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Match: A0A059AEB0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01613 PE=4 SV=1)

HSP 1 Score: 508.449 bits (1308), Expect = 5.549e-169
Identity = 252/268 (94.03%), Postives = 262/268 (97.76%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
             KPI+L DLWIRP FGGRGRKIPGTLE HVNGFRYSTTR DERVD+++GNIKHAFFQPAEKEMITLLHFHLHNHIMVGN+KTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQ+FVNRVNDLWGQPQF GLDLEFDQPLRELGFHGVPYKASAFIVPTS+CLVEL+ETPFLVV+LSEIEIVNLERVGLGQKNFDMTIVFKDFK+DVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ
Sbjct:  675 MKPIKLSDLWIRPAFGGRGRKIPGTLEAHVNGFRYSTTRQDERVDILFGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNRKTKDVQFYVEVMDVVQTLGGGKRSAYDPDEIEEEQRERDRKNKINMDFQNFVNRVNDLWGQPQFGGLDLEFDQPLRELGFHGVPYKASAFIVPTSTCLVELIETPFLVVTLSEIEIVNLERVGLGQKNFDMTIVFKDFKRDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 942

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_ORYSJ (FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16 PE=2 SV=2)

HSP 1 Score: 477.248 bits (1227), Expect = 3.125e-159
Identity = 236/267 (88.39%), Postives = 252/267 (94.38%), Query Frame = 2

Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            KP+RL D+WIRP FGGRGRK+ GTLE+HVNGFRYST+RADERVD+MYGN+KHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGG +RSA DPDEIEEEQRERDRKN+INMDFQ+FVN+VND W QPQF GLDLEFD PLRELGFHGVPYKASAFI+PTS+CLVEL+ETPFLVV+LSEIEIVNLERVG G KNFDM IVFKDFKKDVLRIDSIPSTSLD IKEWLDTTD+KYYESRLNLNWR ILKTI DDPQ
Sbjct:  661 KPVRLSDVWIRPAFGGRGRKLTGTLESHVNGFRYSTSRADERVDIMYGNVKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGNRRSALDPDEIEEEQRERDRKNRINMDFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPFLVVTLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSTSLDAIKEWLDTTDLKYYESRLNLNWRPILKTIIDDPQ 927

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_MAIZE (FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE=2 SV=1)

HSP 1 Score: 466.077 bits (1198), Expect = 6.150e-155
Identity = 232/268 (86.57%), Postives = 247/268 (92.16%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
             K +RL D+WIRP FGGRGRK+ G LE H NGFRYST+R+DERVD+M+GNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGG +RSA DPDEIEEEQRERDRKN+INMDFQ+FVN+VND W QPQF GLDLEFD PLRELGFHGVPYKASAFI+PTS+CLVEL+ETPFLVVSLSEIEIVNLERVG G KNFDM IVFKDFKKDVLRIDSIPS SLD IKEWLDTTD+KYYESRLNLNWR ILKTI DDPQ
Sbjct:  660 MKMMRLSDVWIRPAFGGRGRKLTGNLEAHFNGFRYSTSRSDERVDIMFGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGSRRSALDPDEIEEEQRERDRKNRINMDFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPFLVVSLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSASLDAIKEWLDTTDLKYYESRLNLNWRPILKTIIDDPQ 927

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_ARATH (FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1 SV=1)

HSP 1 Score: 462.996 bits (1190), Expect = 1.156e-153
Identity = 229/268 (85.45%), Postives = 248/268 (92.54%), Query Frame = 2

Query:    2 FKPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            FKP+RL +LWIRP F GR +KIPGTLE H NGFRYSTTR DERVDV++ NIKHAFFQPAEKEMITLLHFHLHNHIMVG KKTKDVQFYVEVMDVVQ+LGGG+RSAYDPDEI+EEQRERDRKNKINMDF  F NRVND+W  PQF  LDLEFDQPLRELGFHGVP+K SAFI+PTSSCLVEL+E PFLVVSLSEIEIVNLERVG GQKNFDM I+FKDFKKDVLR+DS+P++SL+GIKEWLDTTDIKYYES+LNLNWRQILKTITDDPQ
Sbjct:  675 FKPLRLSELWIRPPFSGR-KKIPGTLEAHANGFRYSTTRPDERVDVLFANIKHAFFQPAEKEMITLLHFHLHNHIMVGTKKTKDVQFYVEVMDVVQSLGGGRRSAYDPDEIDEEQRERDRKNKINMDFNHFANRVNDMWQLPQFASLDLEFDQPLRELGFHGVPHKTSAFIIPTSSCLVELIEYPFLVVSLSEIEIVNLERVGFGQKNFDMAIIFKDFKKDVLRVDSVPTSSLEGIKEWLDTTDIKYYESKLNLNWRQILKTITDDPQ 941

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SP16H_XENLA (FACT complex subunit SPT16 OS=Xenopus laevis GN=supt16h PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 4.632e-70
Identity = 126/264 (47.73%), Postives = 178/264 (67.42%), Query Frame = 2

Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            +L DL+IRP    +  ++ G+LE HVNGFR+++ R D +VD++Y NIKHA FQP + EMI +LHFHL N IM G K+  DVQFY EV ++   LG   +  +D D++  EQ ER+ ++K+   F++F+ +V  L  +      DLEF+ P R+LGF+G PY+++  + PTSS LV   E P  VV+L E+E+V+ ERV    KNFDM IV+K++ K V  I++IP  SLD IKEWL++ DIKY E   +LNW +I+KTI DDP+
Sbjct:  663 KLKDLYIRPNIAQK--RMQGSLEAHVNGFRFTSVRGD-KVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGK-HQHMHDRDDLYAEQLEREMRHKLKTAFKNFIEKVESLTKE------DLEFEIPFRDLGFNGAPYRSTCLLQPTSSSLVNTTEWPPFVVTLDEVELVHFERVQFHLKNFDMVIVYKEYGKKVTMINAIPMASLDPIKEWLNSCDIKYTEGVQSLNWTKIMKTIVDDPE 916

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SP16H_HUMAN (FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 6.486e-70
Identity = 124/264 (46.97%), Postives = 178/264 (67.42%), Query Frame = 2

Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            +L DL+IRP    +  ++ G+LE HVNGFR+++ R D +VD++Y NIKHA FQP + EMI +LHFHL N IM G K+  DVQFY EV ++   LG   +  +D D++  EQ ER+ ++K+   F++F+ +V  L  +      +LEF+ P R+LGF+G PY+++  + PTSS LV   E P  VV+L E+E+++ ERV    KNFDM IV+KD+ K V  I++IP  SLD IKEWL++ D+KY E   +LNW +I+KTI DDP+
Sbjct:  661 KLKDLYIRPNIAQK--RMQGSLEAHVNGFRFTSVRGD-KVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGK-HQHMHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKE------ELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPE 914

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SP16H_MOUSE (FACT complex subunit SPT16 OS=Mus musculus GN=Supt16h PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 1.073e-69
Identity = 123/264 (46.59%), Postives = 178/264 (67.42%), Query Frame = 2

Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            +L DL+IRP    +  ++ G+LE HVNGFR+++ R D +VD++Y NIKHA FQP + EMI +LHFHL N +M G K+  DVQFY EV ++   LG  +   +D D++  EQ ER+ ++K+   F++F+ +V  L  +      +LEF+ P R+LGF+G PY+++  + PTSS LV   E P  VV+L E+E+++ ERV    KNFDM IV+KD+ K V  I++IP  SLD IKEWL++ D+KY E   +LNW +I+KTI DDP+
Sbjct:  661 KLKDLYIRPNIAQK--RMQGSLEAHVNGFRFTSVRGD-KVDILYNNIKHALFQPCDGEMIIVLHFHLKNAVMFGKKRHTDVQFYTEVGEITTDLGKHQH-MHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKE------ELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPE 914

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_CAEBR (FACT complex subunit spt-16 OS=Caenorhabditis briggsae GN=spt-16 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.385e-69
Identity = 131/264 (49.62%), Postives = 173/264 (65.53%), Query Frame = 2

Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQ 805
            +L DL IRP      ++I G+LE H NGFRY++ R D R+DV+Y NIKHAFFQP + EMI LLHFHL N +M G KK KDVQFY EV ++   LG       D D++  EQ+ER+ + ++N  F SF  +V+ L    QF     EFD P   LGF GVP++++  + PT+SCLV L E P  +V+LSE+E+V+ ERV L  KNFDM  +FKD+K     +  IP +S+D IKEWL T DI Y E   +LNW +++KTITDDP+
Sbjct:  660 KLKDLLIRPNI--IQKRITGSLEAHTNGFRYTSLRGD-RIDVLYNNIKHAFFQPCDNEMIILLHFHLKNPVMWGKKKYKDVQFYTEVGEITTDLGK-YHHMQDRDDMHSEQQERELRRRLNTTFNSFCEKVSRLTND-QF-----EFDSPFAGLGFFGVPFRSATTLKPTASCLVNLTEWPPFIVTLSEVELVHFERVSLQLKNFDMVFIFKDYKMKTQMVAQIPMSSIDKIKEWLHTCDIWYSEGIQSLNWAKVMKTITDDPE 913

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_SCHPO (FACT complex subunit spt16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spt16 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 2.421e-68
Identity = 120/270 (44.44%), Postives = 181/270 (67.04%), Query Frame = 2

Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRY-STTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802
            +P  + D+++RP   G+  ++PG +E H NG RY S  R+D  +D+++ N+KH FFQP E E+I L+H HL   IMVG +KT+DVQFY EV D+     G K+  Y     DE+E+EQ ER R+ +++ +F+SF  ++       + +   +E D P REL F+GVP++++  + PT+ CLV+L +TPF V++L+EIEI +LERV  G KNFD+  +F+DF++  + I++IP   LD +KEWLD+ DI +YE  LNLNW  I+KT+ +DP
Sbjct:  659 RPAHINDVYVRPAIDGK--RLPGFIEIHQNGIRYQSPLRSDSHIDLLFSNMKHLFFQPCEGELIVLIHVHLKAPIMVGKRKTQDVQFYREVSDIQFDETGNKKRKYMYGDEDELEQEQEERRRRAQLDREFKSFAEKI------AEASEGRIELDIPFRELAFNGVPFRSNVLLQPTTDCLVQLTDTPFTVITLNEIEIAHLERVQFGLKNFDLVFIFQDFRRPPIHINTIPMEQLDNVKEWLDSCDICFYEGPLNLNWTTIMKTVNEDP 920

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_CAEEL (FACT complex subunit spt-16 OS=Caenorhabditis elegans GN=spt-16 PE=3 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 4.008e-68
Identity = 130/262 (49.62%), Postives = 172/262 (65.65%), Query Frame = 2

Query:   14 RLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYXXXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDD 799
            +L DL IRP      ++I G+LE H NGFRY++ R D R+DV+Y NIKHAFFQP + EMI LLHFHL N ++ G KK KDVQFY EV ++   LG       D D+++ EQ+ER+ + ++N  F SF  +V+ L    QF     EFD P   LGF GVPY+++  + PT+SCLV L E P  +V+LSE+E+V+ ERV L  KNFDM  +FKD+K     +  IP +S+D IKEWL T DI Y E   +LNW +++KTITDD
Sbjct:  661 KLKDLLIRPNI--IQKRITGSLEAHTNGFRYTSLRGD-RIDVLYNNIKHAFFQPCDNEMIILLHFHLKNPVLWGKKKYKDVQFYTEVGEITTDLGK-YHHMQDRDDMQSEQQEREMRRRLNAAFNSFCEKVSRLTND-QF-----EFDSPFAGLGFFGVPYRSATTLKPTASCLVNLTEWPTFIVTLSEVELVHFERVSLQLKNFDMVFIFKDYKIKPQMVAQIPMSSIDKIKEWLHTCDIWYSEGIQSLNWAKVMKTITDD 912

[Close]

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Match: SPT16_EMENI (FACT complex subunit spt16 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=spt16 PE=3 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 4.716e-67
Identity = 120/269 (44.61%), Postives = 179/269 (66.54%), Query Frame = 2

Query:    5 KPIRLPDLWIRPVFGGRGRKIPGTLETHVNGFRYSTTRADERVDVMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGGKRSAYX---XXXXXXXXXXXXXKNKINMDFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFHGVPYKASAFIVPTSSCLVELVETPFLVVSLSEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSTSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDP 802
            +P++LPD+++RP   G+  ++PG +E H NG RY +   +E VDV++ N+KH FFQP   E+I L+H HL   IM+G +KT+D+QFY E  ++     G +R  +     +E E EQ ER R+  ++ +F++F  ++ D  G+ +  G+D+  D P RE+GF GVP +++  I PT+  LV+L E PFLV+SL+EIEI +LERV  G KNFD+  VFKDF +  + I++IP  +L+G+K+WLD+ DI Y E  LNLNW  I+KT+  DP
Sbjct:  661 RPVKLPDVYLRPPLDGK--RVPGEVEIHQNGLRYVSPFRNEHVDVLFSNVKHLFFQPCAHELIVLIHVHLKTPIMIGKRKTRDIQFYREATEMQFDETGNRRRKHRYGDEEEFEAEQEERRRRAALDREFKAFAEKIADA-GKDE--GVDV--DIPFREIGFTGVPNRSNVLIQPTTDALVQLTEPPFLVISLNEIEIAHLERVQFGLKNFDLVFVFKDFHRAPVHINTIPVENLEGVKDWLDSVDIAYTEGPLNLNWTTIMKTVVSDP 922

The following BLAST results are available for this feature:

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot

BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0B0NAB2_GOSAR	1.909e-176	98.51	FACT complex subunit SPT16-like protein OS=Gossypi...	[more]
A0A0D2W816_GOSRA	6.212e-176	98.13	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0MRE4_GOSAR	7.168e-176	98.51	FACT complex subunit SPT16-like protein OS=Gossypi...	[more]
A0A0D2TPK9_GOSRA	2.187e-175	98.13	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061F3Y4_THECC	1.069e-174	97.39	Global transcription factor C isoform 1 OS=Theobro...	[more]
W9RSN6_9ROSA	1.300e-169	94.03	FACT complex subunit SPT16 OS=Morus notabilis GN=L...	[more]
A0A059AEK2_EUCGR	1.732e-169	94.03	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
A0A059AEV5_EUCGR	3.561e-169	94.03	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]
M5W3N0_PRUPE	3.757e-169	94.40	Uncharacterized protein OS=Prunus persica GN=PRUPE...	[more]
A0A059AEB0_EUCGR	5.549e-169	94.03	Uncharacterized protein OS=Eucalyptus grandis GN=E...	[more]

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BLAST of g.arboreum_cottongen_reftransV1_0011262 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
SPT16_ORYSJ	3.125e-159	88.39	FACT complex subunit SPT16 OS=Oryza sativa subsp. ...	[more]
SPT16_MAIZE	6.150e-155	86.57	FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE...	[more]
SPT16_ARATH	1.156e-153	85.45	FACT complex subunit SPT16 OS=Arabidopsis thaliana...	[more]
SP16H_XENLA	4.632e-70	47.73	FACT complex subunit SPT16 OS=Xenopus laevis GN=su...	[more]
SP16H_HUMAN	6.486e-70	46.97	FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT...	[more]
SP16H_MOUSE	1.073e-69	46.59	FACT complex subunit SPT16 OS=Mus musculus GN=Supt...	[more]
SPT16_CAEBR	2.385e-69	49.62	FACT complex subunit spt-16 OS=Caenorhabditis brig...	[more]
SPT16_SCHPO	2.421e-68	44.44	FACT complex subunit spt16 OS=Schizosaccharomyces ...	[more]
SPT16_CAEEL	4.008e-68	49.62	FACT complex subunit spt-16 OS=Caenorhabditis eleg...	[more]
SPT16_EMENI	4.716e-67	44.61	FACT complex subunit spt16 OS=Emericella nidulans ...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013719	Domain of unknown function DUF1747	SMART	SM01287	Rtt106_2	coord: 114..204 e-value: 2.7E-36 score: 136.6
IPR013719	Domain of unknown function DUF1747	PFAM	PF08512	Rtt106	coord: 121..202 e-value: 1.0E-17 score: 64.2
None	No IPR available	PANTHER	PTHR13980	CDC68 RELATED	coord: 1..222

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.arboreum_cottongen_reftransV1_0011262 ID=g.arboreum_cottongen_reftransV1_0011262; Name=g.arboreum_cottongen_reftransV1_0011262; organism=Gossypium arboreum; type=contig; length=806bp
GTTCAAGCCTATTAGGCTACCTGACCTTTGGATTCGTCCTGTTTTTGGTG
GTCGTGGGAGGAAGATTCCAGGAACACTTGAAACTCATGTTAATGGTTTT
CGATATTCTACTACTAGAGCTGATGAGCGTGTTGATGTTATGTATGGGAA
CATAAAGCATGCATTCTTCCAGCCTGCAGAGAAAGAAATGATCACTCTCC
TTCACTTTCATCTGCACAATCACATAATGGTGGGAAACAAAAAAACTAAA
GATGTGCAATTTTATGTTGAGGTTATGGATGTTGTCCAGACATTGGGAGG
GGGAAAGAGGTCTGCTTATGACCCTGATGAGATTGAAGAAGAGCAAAGGG
AGAGGGATAGGAAGAATAAGATCAACATGGATTTTCAGAGTTTTGTGAAC
CGGGTAAATGATCTATGGGGGCAGCCTCAGTTCAATGGTCTTGATCTTGA
GTTTGATCAACCGCTTAGAGAACTTGGCTTCCATGGGGTCCCCTACAAAG
CCTCCGCTTTTATTGTGCCAACGTCAAGCTGTTTAGTTGAGTTGGTAGAG
ACTCCTTTCCTTGTGGTCTCCTTAAGCGAGATTGAGATCGTGAACCTGGA
GAGGGTTGGCCTTGGGCAGAAAAATTTTGACATGACCATAGTGTTCAAGG
ACTTCAAGAAAGATGTACTAAGGATTGATTCCATCCCTTCAACCTCACTT
GATGGCATCAAGGAATGGCTTGATACAACAGACATAAAGTATTACGAGAG
CAGGCTGAATCTGAACTGGCGGCAGATTCTGAAGACAATCACTGACGATC
CACAGA

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR013719	RTT106/SPT16-like_middle_dom

Search form

g.arboreum_cottongen_reftransV1_0011262, g.arboreum_cottongen_reftransV1_0011262 (contig) Gossypium arboreum

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