g.arboreum_cottongen_reftransV1_0012685, g.arboreum_cottongen_reftransV1_0012685 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A0D2NJR5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G006500 PE=4 SV=1) HSP 1 Score: 590.112 bits (1520), Expect = 0.000e+0 Identity = 342/353 (96.88%), Postives = 344/353 (97.45%), Query Frame = 3 Query: 54 MAKNMGVAGAAASSELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDNQEHINDSNSEADRKHEINANISXXXXXXXXXXXCPXXXXXXXXXXXXSLAA 1112 MAKNMGVA AAA SELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFL SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSKEEKQEVEEEEDD SHQ KKKKNKGRIHDVQYMD++EHINDSNSEAD KHEINANISTKKKKTALKKLC IDIKVKDKKKKKSLAA Sbjct: 1 MAKNMGVAVAAALSELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLGSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSKEEKQEVEEEEDDTSHQ-KTKKKKNKGRIHDVQYMDDREHINDSNSEADGKHEINANISTKKKKTALKKLCSIDIKVKDKKKKKSLAA 352
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A0D2Q182_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G006500 PE=4 SV=1) HSP 1 Score: 461.84 bits (1187), Expect = 3.109e-158 Identity = 227/232 (97.84%), Postives = 227/232 (97.84%), Query Frame = 3 Query: 54 MAKNMGVAGAAASSELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSF 749 MAKNMGVA AAA SELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFL SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIR Sbjct: 1 MAKNMGVAVAAALSELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLGSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRKL 232 HSP 2 Score: 68.5514 bits (166), Expect = 1.119e-9 Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 1 Query: 943 FSTWIIKNILMTLTLRLIENMKSMRISQPRKRRLH 1047 FSTW+I+NILMTLTLRL+ENMKSMRISQPRKRRLH Sbjct: 256 FSTWMIENILMTLTLRLMENMKSMRISQPRKRRLH 290
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A061DJ97_THECC (Ribosomal protein L1p/L10e family, putative OS=Theobroma cacao GN=TCM_001556 PE=4 SV=1) HSP 1 Score: 437.573 bits (1124), Expect = 1.079e-147 Identity = 244/305 (80.00%), Postives = 271/305 (88.85%), Query Frame = 3 Query: 102 NVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIID---DPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDNQEHINDSNSEADRKHE 1007 VEKAVNALLKWRDSQS +QKPQLLEQDE LYLIVSLKKIPQK RVNP KVPLPHP+ID DPAELCL IDDRSKSG+TKDAASKKIKSENIPI+KVIKLSKLKTDY+ FEAKRKLCDSYDMFFADKRI+PLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIH +SA+LFLS+GTC VVKV KLS++KKEIV+NV AAI+GIAE VPSKWGNIRSFHLKLLDSLALPL+QA+PDLRLKILA+AD+ + E+++ EE DAS+QK KK KK+KGRIH+VQYMD E+ ND++S A RK E Sbjct: 23 TVEKAVNALLKWRDSQSHSQKPQLLEQDELLYLIVSLKKIPQKPRVNPHKVPLPHPLIDPSTDPAELCLVIDDRSKSGLTKDAASKKIKSENIPISKVIKLSKLKTDYRAFEAKRKLCDSYDMFFADKRILPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHKGYASALLFLSTGTCSVVKVGKLSMDKKEIVDNVTAAIHGIAEIVPSKWGNIRSFHLKLLDSLALPLYQAVPDLRLKILAEADNPSKEVLEEKQEEE---DASYQKKKKHKKSKGRIHEVQYMD--ENSNDTDSGAKRKDE 322
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: W9RT08_9ROSA (Ribosomal L1 domain-containing protein 1 OS=Morus notabilis GN=L484_021401 PE=4 SV=1) HSP 1 Score: 379.793 bits (974), Expect = 4.760e-124 Identity = 188/292 (64.38%), Postives = 231/292 (79.11%), Query Frame = 3 Query: 84 AASSELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPI-IDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMD 956 A S V++AVN+LLKWR+S+SQ Q PQLL+ DEF+YLI++LKKIP K R+N K+PLPHP+ + +ELCLFIDDR KSG+TKD A KKIKSE IP++KV+KLSKLK+DY+PFEAKRKLCDSYDMFFADKR++PLLPRLLGK FFKK+KIPVPVDLKH NWKEQI AC SA+LFL +GTC VV+VAK S+ EI EN +AAINGIAE VP KWGN+RSFHLKLL+S+ALP++QA+PD++LKI + E+ + + +D K KKK RIH+V+YMD Sbjct: 18 ARMSPKTVQRAVNSLLKWRNSKSQTQNPQLLDDDEFVYLILTLKKIPSKDRINAHKIPLPHPLHAGESSELCLFIDDRPKSGLTKDDAMKKIKSEGIPVSKVLKLSKLKSDYRPFEAKRKLCDSYDMFFADKRVVPLLPRLLGKHFFKKRKIPVPVDLKHQNWKEQIEKACGSALLFLRTGTCSVVRVAKASMGAAEIAENAMAAINGIAEIVPRKWGNVRSFHLKLLESVALPVYQALPDIKLKIEGIKEDEEKKTEKGEGDKRVGEDEKAGKKKKKG----RIHEVRYMD 305
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A067F0Q1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014066mg PE=4 SV=1) HSP 1 Score: 379.022 bits (972), Expect = 9.123e-124 Identity = 189/299 (63.21%), Postives = 237/299 (79.26%), Query Frame = 3 Query: 75 AGAAASSELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPII----DDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDN 959 AG+ S + VE+AV ALLKW S SQ QKPQLLEQD+F+YLI++LKKIPQ +R N K+PLPH ++ D+P E+CL +DDR KS +TKDA KKIK++N+PI KVIK++KLKTDY+PFEAKRKLCDSYD+F ADKR++PLLP+LLGK FFKKKKIPVPVDLKH NWKEQI C SA+L+L +GTC V+KV K+S+ ++I ENVIAAING+AE VP KWGN+RSFHLKLL+SLALP++QA+PDL+LKI ++ +++ E E ED H KK KK KGRIH+V+YMD+ Sbjct: 15 AGSRVSPK-TVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKIPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDIFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPVYQAVPDLKLKIEGVKENEGEGQDKDSEKENAEDVNDHGSKKKLKKKKGRIHEVRYMDS 312
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: V4SRI4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031604mg PE=4 SV=1) HSP 1 Score: 376.711 bits (966), Expect = 7.594e-123 Identity = 189/299 (63.21%), Postives = 236/299 (78.93%), Query Frame = 3 Query: 75 AGAAASSELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPII----DDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDN 959 AG+ S + VE+AV ALLKW S SQ QKPQLLEQD+F+YLI++LKK+PQ +R N K+PLPH ++ D+P E+CL +DDR KS +TKDA KKIK++N+PI KVIK++KLKTDY+PFEAKRKLCDSYDMF ADKR++PLLP+LLGK FFKKKKIPVPVDLKH NWKEQI C SA+L+L +GTC V+KV K+S+ ++I ENVIAAING+AE VP KWGN+RSFHLKLL+SLALP++QA+PDL+LKI + ++K+ E ED H KK KK KGRIH+V+YMD+ Sbjct: 15 AGSRVSPK-TVERAVKALLKWLKSNSQTQKPQLLEQDDFVYLILTLKKVPQVSRTNAFKIPLPHSLLGNDSDNPPEICLIMDDRPKSNLTKDAVMKKIKNDNLPITKVIKITKLKTDYRPFEAKRKLCDSYDMFLADKRVVPLLPKLLGKHFFKKKKIPVPVDLKHQNWKEQIEKVCGSALLYLRTGTCSVLKVGKVSMGAEDIAENVIAAINGVAEIVPRKWGNVRSFHLKLLESLALPVYQAVPDLKLKIEG-VKENEGEGQDKESKENAEDVNDHGSKKKLKKKKGRIHEVRYMDS 311
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: A0A067L5R8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22354 PE=4 SV=1) HSP 1 Score: 366.696 bits (940), Expect = 1.347e-119 Identity = 175/250 (70.00%), Postives = 213/250 (85.20%), Query Frame = 3 Query: 84 AASSELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKA--RVNPIKVPLPHPIID---DPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKI 818 + S +E+A+ ALLKWR ++S+ QKPQLLE DEF+YLI++LKKIPQK RVNP KV LP+P+I+ D +ELCL IDDR KSG+TKDAA KKI+++NIPI+K+IKLSKLKTDY+PFEAKRKLCDSYDMFFAD+R+IPLLP++LGKQFFKKKKIPV VDLKH NWKEQI AC S +LFLS+GTC VVKV ++S+ K+E+V NV+AAIN IAE VP KWG IRS HLKLL+SLALPL++A+PD +LKI Sbjct: 8 SGVSPKTIERAIGALLKWRAAKSETQKPQLLESDEFVYLILTLKKIPQKGVSRVNPYKVSLPNPLINPQNDNSELCLIIDDRPKSGLTKDAAQKKIQNDNIPISKIIKLSKLKTDYRPFEAKRKLCDSYDMFFADRRVIPLLPKMLGKQFFKKKKIPVAVDLKHKNWKEQIDKACGSGLLFLSTGTCSVVKVGRVSMGKEEMVNNVVAAINEIAEIVPRKWGGIRSLHLKLLESLALPLYEALPDFKLKI 257
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: V4L1Q6_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10006007mg PE=4 SV=1) HSP 1 Score: 361.688 bits (927), Expect = 3.010e-117 Identity = 185/319 (57.99%), Postives = 233/319 (73.04%), Query Frame = 3 Query: 102 NVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPII---DDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXD----DASHQXXXXXXXXXG----RIHDVQYMD-NQEHINDSNSEADRKHEINANI 1022 V+ AVNALLKWR +S+ +KPQLLEQDEF+YLIV+LKKIPQ +R N +V LPHP+I +D ELCL IDDR KSG+TKD A KKIKSENIP+ KV+KLSKLKTDY+PFEAKRKLCDSYDMFFAD+R+IPLLPRL+GK+FF +KKIPVPVDLKH NWKEQ+ AC SAM F+ +GTC V+KV KLS+E +EI ENV+ +NG+ E +P+KW +RS HLKL +S+ALP++Q++PDL+LKI DA S ++ + + + D D S K RIH+V+YMD N + D + D E+N I Sbjct: 28 TVDGAVNALLKWRSEKSKTEKPQLLEQDEFVYLIVTLKKIPQTSRTNAYRVLLPHPLINPAEDSPELCLIIDDRPKSGLTKDDAMKKIKSENIPVTKVLKLSKLKTDYRPFEAKRKLCDSYDMFFADRRVIPLLPRLIGKKFFARKKIPVPVDLKHKNWKEQMEKACGSAMFFMRTGTCSVIKVGKLSMESEEIAENVMETLNGVVEFLPNKWKYVRSLHLKLSESVALPIYQSVPDLKLKI--DAFDTEKSVVKEVKKKGKSDAVVVDGSESSEKSVAVKGKKKKGRIHEVRYMDSNVSEVLDEDEIGD--VEVNNEI 342
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: D7LW62_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_486318 PE=4 SV=1) HSP 1 Score: 358.992 bits (920), Expect = 3.901e-116 Identity = 183/292 (62.67%), Postives = 222/292 (76.03%), Query Frame = 3 Query: 93 SELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPII---DDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYMDN 959 S V A+N L KWR +S+ +KPQLLEQDE +YLI SLKKIPQ +R N ++PLPHP+I +D ELCL IDDR KSG+TK KKIKSENIPI KVIKLSKLKTDYK FEAKRKLCDSYDMFFAD+RIIPLLPR++GK+FF KKIPV +DLKH NWK+QI AC SAM F+ +GTC V+KV KLS+E EI+ENV+A +NG+ E +P+KW +RS HLKL +SLALP++Q++PDL+LKI A A + KEEK+ E D T K KK KGRIH+V+YMD+ Sbjct: 27 SPYTVGSALNGLTKWRSEKSKTEKPQLLEQDELVYLIASLKKIPQTSRTNAYRIPLPHPLINPTEDSPELCLIIDDRPKSGLTKADVMKKIKSENIPITKVIKLSKLKTDYKAFEAKRKLCDSYDMFFADRRIIPLLPRVIGKKFFTSKKIPVAIDLKHKNWKQQIEKACGSAMFFIRTGTCSVIKVGKLSMELNEIIENVMATLNGVVELLPNKWKYVRSLHLKLSESLALPIYQSVPDLKLKIDAFATGKSVVKEEKEGEVEAADGGEKSVTGKGKKKKGRIHEVRYMDS 318
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Match: B9IDC0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s12760g PE=4 SV=1) HSP 1 Score: 357.451 bits (916), Expect = 5.037e-116 Identity = 180/290 (62.07%), Postives = 224/290 (77.24%), Query Frame = 3 Query: 102 NVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKA--RVNPIKVPLPH----PIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAMPDLRLKILADADHHTSSXXXXXXXXXXXDDASHQXXXXXXXXXGRIHDVQYM 953 VEKAVNALLKWR S QKPQLLEQDEF YLI++LKKIPQK R+N K+PLP+ P+I+ P E+CL IDDR KSG+ KDAA KKI+++N+PI+K+IK+SKLKTDY+PFEAKRKL DSYDMFFADKR++PLLP++LGKQFFKKKKIPV +DLKH+NWKEQI AC SA+L+L SGTC VVKV ++S+ ++EI +NV+AAINGIA+ VP KWG +RSFHLKLLDSLALP++Q +PD +LKI + + EE+ + K KGRI +V+YM Sbjct: 16 TVEKAVNALLKWRSSTLNTQKPQLLEQDEFFYLILTLKKIPQKGVSRINAHKIPLPNSLINPLIEAP-EICLIIDDRPKSGLNKDAAKKKIQNDNLPISKIIKVSKLKTDYRPFEAKRKLRDSYDMFFADKRVVPLLPKMLGKQFFKKKKIPVTLDLKHHNWKEQIDKACGSALLYLRSGTCSVVKVGRVSMSREEIAKNVMAAINGIADIVPRKWGGVRSFHLKLLDSLALPVYQVVPDSKLKIDGGPKEQENDEGVVSVEEEKAKEGR------VGKKKGRIQEVRYM 298
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_PONAB (Ribosomal L1 domain-containing protein 1 OS=Pongo abelii GN=RSL1D1 PE=2 SV=2) HSP 1 Score: 141.354 bits (355), Expect = 1.842e-35 Identity = 82/235 (34.89%), Postives = 137/235 (58.30%), Query Frame = 3 Query: 105 VEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGI--TKDAASKKIKSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLS-SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797 V KAV+ALL S+ + LL ++E L+L+V L KIP K +++ LPH I D ++CLF D S T+ K + I ++++I L LK +YK +EAK +L S+D F D RI LLP L+G+ F+++KK+PV V+L N +I++ +L +S SG+C +++ + ++ + I+EN++A G++E++P KW +++ +K S ALP+F + Sbjct: 36 VRKAVDALLTHCKSR-KNNYGLLLNENESLFLMVVLWKIPSKELR--VRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSSF 267
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_HUMAN (Ribosomal L1 domain-containing protein 1 OS=Homo sapiens GN=RSL1D1 PE=1 SV=3) HSP 1 Score: 141.354 bits (355), Expect = 1.842e-35 Identity = 82/235 (34.89%), Postives = 137/235 (58.30%), Query Frame = 3 Query: 105 VEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGI--TKDAASKKIKSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLS-SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797 V KAV+ALL S+ + LL ++E L+L+V L KIP K +++ LPH I D ++CLF D S T+ K + I ++++I L LK +YK +EAK +L S+D F D RI LLP L+G+ F+++KK+PV V+L N +I++ +L +S SG+C +++ + ++ + I+EN++A G++E++P KW +++ +K S ALP+F + Sbjct: 36 VRKAVDALLTHCKSR-KNNYGLLLNENESLFLMVVLWKIPSKELR--VRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSSF 267
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_MOUSE (Ribosomal L1 domain-containing protein 1 OS=Mus musculus GN=Rsl1d1 PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.145e-33 Identity = 73/212 (34.43%), Postives = 127/212 (59.91%), Query Frame = 3 Query: 171 LLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKI-KSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSS-GTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797 LL E L+L+V L KIP+K +KVPLPH I+ + +++CLF D S + KK+ K + I+++I LKT+YK +EAK +L S+++F D RI LP +G+ F+++KK+PV V+L N ++I+ + +L +S G+C +++ +E + IV+N++A ++E++P KW +++ LK S++LP+F + Sbjct: 57 LLSGSENLFLMVILWKIPEKELR--VKVPLPHSILSESSDVCLFTKDEFDSPEQTEGFYKKLLKKHGVNTISQIIPFKTLKTEYKAYEAKLRLLGSFEVFITDARIRRHLPSHIGRHFYQRKKVPVSVNLLAKNLSKEINRCITGTVLNISKRGSCSTIRIGHTGMETEHIVDNILAVSEMLSEKLPEKWQSVKLLFLKTEKSVSLPIFSSF 266
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1D1_BOVIN (Ribosomal L1 domain-containing protein 1 OS=Bos taurus GN=RSL1D1 PE=2 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 9.133e-33 Identity = 82/238 (34.45%), Postives = 134/238 (56.30%), Query Frame = 3 Query: 96 ELNVEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRS--KSGITKDAASKKIKSENI-PINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLS-SGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLKLLDSLALPLFQAM 797 E V+KAV ALL S+ A LL ++E +L+V L KIP K +++ LPH I D A++CLF D S T+ K + + I I+++I LK +YK +EAK +L S+D F D RI LLP LG+ F+ +KK+PV V+L+ +I++ +L +S SG+C +++ + + IVENV+A +++++P KW +++ +K S++LP+F + Sbjct: 31 EEQVKKAVEALLAHSRSRKNANG-LLLNENENFFLMVVLWKIPSKELR--VRLSLPHGIRSDLADVCLFTKDEPNLSSEQTERYYKKLLNNHGIKTISQIIPFRTLKKEYKAYEAKLRLLGSFDFFITDARIRRLLPSHLGRHFYNRKKVPVSVNLQSKTLSREINDCIGGTVLNISKSGSCSTIRIGHTGMPIQHIVENVVAVAKSLSQKLPEKWESVKLLFVKTERSVSLPVFSSF 265
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1DB_SCHPO (Putative ribosome biogenesis protein C8F11.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC8F11.04 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.112e-28 Identity = 84/259 (32.43%), Postives = 140/259 (54.05%), Query Frame = 3 Query: 90 SSELNVEKAVNALLKWRDSQ-------SQAQKPQLLEQD----EFLYL-IVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDD--RSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAM--LFLSSGTCC--VVKVAKLSLEKKEIVENVIAAINGIAER-VPSKWGNIRSFHLKLLDSLALPLFQAMPDLR 809 S+ +EK +ALL++ + S+++K LLE + E ++L + +LK I ++ P K+ + +P+I +E CL + D R + +A K+ + +VI LSKLK + +E KR+L D +D+F AD R+IP+LPR+LGK F++K K+PVPV + EQ+ SA + +S C ++K +S E+ ENV + + +++ VP I S HLK S+A+PL+ P+L+ Sbjct: 8 GSDAPLEKVCSALLEYESKRKSSENIDSESKKTNLLEDEQDDIEPVWLQLATLKFIGNNRKLIPYKIAIKNPVIPSSSEACLIVKDPQRVYKDLVNEAGLSKV------VTRVIGLSKLKAKWNSYEQKRQLRDQFDIFLADDRVIPMLPRILGKTFYQKSKVPVPVKISKGT-AEQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPLWNN-PNLK 258
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL1DA_SCHPO (Putative ribosome biogenesis protein C306.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC306.07c PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.041e-16 Identity = 63/237 (26.58%), Postives = 120/237 (50.63%), Query Frame = 3 Query: 105 VEKAVNALLKWRDSQSQAQKPQLLEQDEFLYLIVSLKKIPQKARVNPIKVPLPHPIIDDPAELCLFIDDRSKSGITKDAASKKIKSENIPINKVIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDL--KHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAER-VPSKWGNIRSFHLKLLDSLALPLFQAMPDL 806 +EK + ALL+ S + KP +E+++ + + + + +++ P KV LPH I+ + CL + D ++ +D ++ E I KV+ + +LK YK K +L DS+++F D R++ +P L+GK F +KK P P+ + K + Q+ S L LS+GT + + ++++EN+ + + +P W I + +K DS +LP++ + +L Sbjct: 22 LEKTIRALLQHIRS---SDKP--IEKEKVYIQVNTFQPVEKESLRRPSKVFLPHRIMH-VTDACLIVKDSQQT--YQDLVEQQGLDE--VITKVLSIPRLKLKYKTIREKCELRDSHNLFLVDDRVLKYIPLLMGKVFEQKKIKPFPISVLQKKETLRNQVARCLHSTYLKLSAGTSHTILCGLATQTNEQLLENITTVLKCLLTNFIPKGWSAIDNVAIKTADSASLPIWTSDTNL 248
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: Y3096_DROME (Ribosomal L1 domain-containing protein CG13096 OS=Drosophila melanogaster GN=CG13096 PE=1 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.184e-9 Identity = 43/143 (30.07%), Postives = 71/143 (49.65%), Query Frame = 3 Query: 384 VIKLSKLKTDYKPFEAKRKLCDSYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWK--EQIHNACS-SAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK--LLDSLALPLFQAM 797 V+ ++L+ + FEAKRK +SYD D R+ LGK K + + + L +N K +++ A + +A LS G V V + +++ EN++ I + E P NIRS +LK + + ALPL+ +M Sbjct: 372 VVPFNQLRNEMGSFEAKRKFLNSYDYLLCDGRLSGQATAFLGKNTQKPRNVLHSLRLSKDNDKLPQEVTRALTRTAFRQLSKGDLIAVPVGNHEITAEQLAENILLVIKQLQEVYPGGLANIRSMYLKIDITGTSALPLYVSM 514
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: RL10A_CHLRE (60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A PE=2 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 2.252e-7 Identity = 31/103 (30.10%), Postives = 49/103 (47.57%), Query Frame = 3 Query: 450 SYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLFLSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK 758 +Y F A +I +PRLLG K K P P++ N +E + + S L C V VA + + + EI N++ AIN + + W N+R ++K Sbjct: 104 AYHAFLASDSVIKQIPRLLGPGLNKAGKFPAPIN---KNLEEMVLDTKCSIKFQLKKVLCMGVAVANVGMTEGEIRTNIMYAINFLVSLLKKNWQNVRCLYIK 203
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 2.776e-7 Identity = 34/104 (32.69%), Postives = 50/104 (48.08%), Query Frame = 3 Query: 450 SYDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLF-LSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK 758 SY F A + +I +PRLLG K K P V H E N + + F L C V V LS+E+K++ +NV ++N + + W N+R +LK Sbjct: 105 SYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVS--HQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVRCLYLK 206
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 3.681e-7 Identity = 34/103 (33.01%), Postives = 49/103 (47.57%), Query Frame = 3 Query: 453 YDMFFADKRIIPLLPRLLGKQFFKKKKIPVPVDLKHNNWKEQIHNACSSAMLF-LSSGTCCVVKVAKLSLEKKEIVENVIAAINGIAERVPSKWGNIRSFHLK 758 Y F A + +I +PRLLG K K P V H E N + + F L C V V LS+E+K+I +NV ++N + + W N+R +LK Sbjct: 106 YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVS--HQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLK 206 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0012685 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 11
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0012685 ID=g.arboreum_cottongen_reftransV1_0012685; Name=g.arboreum_cottongen_reftransV1_0012685; organism=Gossypium arboreum; type=contig; length=1356bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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