g.arboreum_cottongen_reftransV1_0019868, g.arboreum_cottongen_reftransV1_0019868 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A0B0MUW9_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_24268 PE=4 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 7.160e-74 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 Query: 91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS Sbjct: 1 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 112
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A0D2QNB4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G0845001 PE=4 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 4.046e-63 Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 1 Query: 91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLP 390 MGYAMSRLEIESELFEGGNVT+EAGCSNR DKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFS ADRCHMISRY P Sbjct: 1 MGYAMSRLEIESELFEGGNVTNEAGCSNRFDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSLADRCHMISRYFP 100
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A061DPZ0_THECC (LEC14B protein, putative isoform 4 OS=Theobroma cacao GN=TCM_004491 PE=4 SV=1) HSP 1 Score: 198.364 bits (503), Expect = 1.070e-58 Identity = 95/117 (81.20%), Postives = 103/117 (88.03%), Query Frame = 1 Query: 76 VAIVEMGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 V I EMGYAMSRLEIESELF+G VT+EAG S RS+KP VDHEIAQLTNL+S P+ERL QLMPGK++LPVSPVKMLAGREGNYS RG FSSADRCHM+SRYLPVNGPWL DQMTS Sbjct: 8 VDIDEMGYAMSRLEIESELFDGSKVTNEAGSSTRSNKPLHNVDHEIAQLTNLRSGPHERLRQLMPGKQQLPVSPVKMLAGREGNYSGRGRFSSADRCHMLSRYLPVNGPWLVDQMTS 124
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A061DQ96_THECC (LEC14B protein, putative isoform 5 OS=Theobroma cacao GN=TCM_004491 PE=4 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 3.240e-57 Identity = 92/112 (82.14%), Postives = 100/112 (89.29%), Query Frame = 1 Query: 91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 MGYAMSRLEIESELF+G VT+EAG S RS+KP VDHEIAQLTNL+S P+ERL QLMPGK++LPVSPVKMLAGREGNYS RG FSSADRCHM+SRYLPVNGPWL DQMTS Sbjct: 1 MGYAMSRLEIESELFDGSKVTNEAGSSTRSNKPLHNVDHEIAQLTNLRSGPHERLRQLMPGKQQLPVSPVKMLAGREGNYSGRGRFSSADRCHMLSRYLPVNGPWLVDQMTS 112
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A061DXY5_THECC (Transducin family protein / WD-40 repeat family protein isoform 3 OS=Theobroma cacao GN=TCM_004491 PE=4 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 6.869e-57 Identity = 92/112 (82.14%), Postives = 100/112 (89.29%), Query Frame = 1 Query: 91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 MGYAMSRLEIESELF+G VT+EAG S RS+KP VDHEIAQLTNL+S P+ERL QLMPGK++LPVSPVKMLAGREGNYS RG FSSADRCHM+SRYLPVNGPWL DQMTS Sbjct: 1 MGYAMSRLEIESELFDGSKVTNEAGSSTRSNKPLHNVDHEIAQLTNLRSGPHERLRQLMPGKQQLPVSPVKMLAGREGNYSGRGRFSSADRCHMLSRYLPVNGPWLVDQMTS 112
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A061DS04_THECC (Transducin family protein / WD-40 repeat family protein isoform 1 OS=Theobroma cacao GN=TCM_004491 PE=4 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 2.163e-56 Identity = 92/112 (82.14%), Postives = 100/112 (89.29%), Query Frame = 1 Query: 91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 MGYAMSRLEIESELF+G VT+EAG S RS+KP VDHEIAQLTNL+S P+ERL QLMPGK++LPVSPVKMLAGREGNYS RG FSSADRCHM+SRYLPVNGPWL DQMTS Sbjct: 1 MGYAMSRLEIESELFDGSKVTNEAGSSTRSNKPLHNVDHEIAQLTNLRSGPHERLRQLMPGKQQLPVSPVKMLAGREGNYSGRGRFSSADRCHMLSRYLPVNGPWLVDQMTS 112
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A061DR32_THECC (Transducin family protein / WD-40 repeat family protein isoform 2 OS=Theobroma cacao GN=TCM_004491 PE=4 SV=1) HSP 1 Score: 194.126 bits (492), Expect = 2.349e-56 Identity = 92/112 (82.14%), Postives = 100/112 (89.29%), Query Frame = 1 Query: 91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 MGYAMSRLEIESELF+G VT+EAG S RS+KP VDHEIAQLTNL+S P+ERL QLMPGK++LPVSPVKMLAGREGNYS RG FSSADRCHM+SRYLPVNGPWL DQMTS Sbjct: 1 MGYAMSRLEIESELFDGSKVTNEAGSSTRSNKPLHNVDHEIAQLTNLRSGPHERLRQLMPGKQQLPVSPVKMLAGREGNYSGRGRFSSADRCHMLSRYLPVNGPWLVDQMTS 112
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A0B0MQM6_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_27027 PE=4 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 3.183e-55 Identity = 90/117 (76.92%), Postives = 100/117 (85.47%), Query Frame = 1 Query: 76 VAIVEMGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 V I EMGYAMSRLEIESELF+GGN EA S R KPF KVD EI+QLTNL+S PN+RLHQL+PGK++LPVSPV+MLAGREGNYS +G FSSADRCHM+SRYLPVNGPWL DQ TS Sbjct: 8 VDIDEMGYAMSRLEIESELFDGGNTVHEASSSTRPGKPFPKVDDEISQLTNLRSGPNDRLHQLVPGKQQLPVSPVRMLAGREGNYSGKGRFSSADRCHMLSRYLPVNGPWLVDQTTS 124
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A0D2R6L9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G007100 PE=4 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 6.340e-53 Identity = 88/117 (75.21%), Postives = 98/117 (83.76%), Query Frame = 1 Query: 76 VAIVEMGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 V I EMGYAMSRLEIESELF+GGN EA S R K F KVD EI+QLTNL+S PN+RLHQL+PGK++LPVSPV+MLAGRE NYS +G FSSADRCHM+SRYLPVNGPWL DQ TS Sbjct: 8 VDIDEMGYAMSRLEIESELFDGGNTVHEASSSTRPGKLFPKVDDEISQLTNLRSGPNDRLHQLVPGKQQLPVSPVRMLAGRESNYSGKGRFSSADRCHMLSRYLPVNGPWLVDQTTS 124
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Match: A0A061DR36_THECC (LEC14B protein, putative isoform 7 (Fragment) OS=Theobroma cacao GN=TCM_004491 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.619e-52 Identity = 86/107 (80.37%), Postives = 95/107 (88.79%), Query Frame = 1 Query: 106 SRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 +RLEIESELF+G VT+EAG S RS+KP VDHEIAQLTNL+S P+ERL QLMPGK++LPVSPVKMLAGREGNYS RG FSSADRCHM+SRYLPVNGPWL DQMTS Sbjct: 9 NRLEIESELFDGSKVTNEAGSSTRSNKPLHNVDHEIAQLTNLRSGPHERLRQLMPGKQQLPVSPVKMLAGREGNYSGRGRFSSADRCHMLSRYLPVNGPWLVDQMTS 115
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Match: LE14B_LITER (LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.872e-27 Identity = 59/112 (52.68%), Postives = 76/112 (67.86%), Query Frame = 1 Query: 91 MGYAMSRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 MGYAMSR E + + + SE + +KP +DHEIAQLT L+S P+E L + + K+ LP+S +KMLAGRE N S RG FSSAD CH++SR+LPVN P + DQMTS Sbjct: 1 MGYAMSRFETDVSVIFSSSSDSETSHDSLINKPVKNLDHEIAQLTRLRSAPHENLSRDLLVKRVLPLSTMKMLAGREANVSGRGRFSSADCCHVVSRHLPVNDPCVVDQMTS 112
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Match: LE14B_PRUAR (LEC14B homolog OS=Prunus armeniaca PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 2.002e-26 Identity = 54/107 (50.47%), Postives = 70/107 (65.42%), Query Frame = 1 Query: 106 SRLEIESELFEGGNVTSEAGCSNRSDKPFCKVDHEIAQLTNLKSVPNERLHQLMPGKKKLPVSPVKMLAGREGNYSRRGGFSSADRCHMISRYLPVNGPWLADQMTS 426 +R ++ + GN +G S ++ DHEIAQLT +S P++ L Q MPGK +L VS +KML GRE N+S RG FSSAD CH++SRYLP+NGPW DQ TS Sbjct: 5 TRFGKDNSACDSGNAVEGSGSSKGPNEVSNDFDHEIAQLTKHRSRPHQLLSQDMPGKSRLLVSTMKMLVGRESNHSGRGRFSSADGCHVLSRYLPINGPWGVDQSTS 111 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0019868 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0019868 ID=g.arboreum_cottongen_reftransV1_0019868; Name=g.arboreum_cottongen_reftransV1_0019868; organism=Gossypium arboreum; type=contig; length=428bpback to top |