g.arboreum_cottongen_reftransV1_0021925, g.arboreum_cottongen_reftransV1_0021925 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A0D2UW24_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G201900 PE=4 SV=1) HSP 1 Score: 290.426 bits (742), Expect = 3.495e-84 Identity = 183/187 (97.86%), Postives = 185/187 (98.93%), Query Frame = 1 Query: 820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGLQMVQDLAWKNKP 1380 PSNQNMTL+QNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNS+TRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQ PIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQG QMVQDLAWKNKP Sbjct: 570 PSNQNMTLRQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSVTRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQHPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGPQMVQDLAWKNKP 756 HSP 2 Score: 240.736 bits (613), Expect = 5.387e-66 Identity = 153/172 (88.95%), Postives = 153/172 (88.95%), Query Frame = 1 Query: 73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSSG 588 APNFGDAMGDRVPPTAWHPMSPQ MGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSV QISPLQ PL SPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQL ASRPLVQPNVSSG Sbjct: 336 APNFGDAMGDRVPPTAWHPMSPQNMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSV---------------QISPLQNPLESPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLPASRPLVQPNVSSG 492
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A0D2VPG6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G201900 PE=4 SV=1) HSP 1 Score: 290.426 bits (742), Expect = 4.183e-84 Identity = 183/187 (97.86%), Postives = 185/187 (98.93%), Query Frame = 1 Query: 820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGLQMVQDLAWKNKP 1380 PSNQNMTL+QNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNS+TRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQ PIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQG QMVQDLAWKNKP Sbjct: 585 PSNQNMTLRQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSVTRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQHPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGPQMVQDLAWKNKP 771 HSP 2 Score: 262.692 bits (670), Expect = 7.223e-74 Identity = 168/172 (97.67%), Postives = 168/172 (97.67%), Query Frame = 1 Query: 73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSSG 588 APNFGDAMGDRVPPTAWHPMSPQ MGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSVQGFNQSSSQIPTVGHQISPLQ PL SPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQL ASRPLVQPNVSSG Sbjct: 336 APNFGDAMGDRVPPTAWHPMSPQNMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSVQGFNQSSSQIPTVGHQISPLQNPLESPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLPASRPLVQPNVSSG 507
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A0D2UVN0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G201900 PE=4 SV=1) HSP 1 Score: 290.426 bits (742), Expect = 5.212e-84 Identity = 183/187 (97.86%), Postives = 185/187 (98.93%), Query Frame = 1 Query: 820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGLQMVQDLAWKNKP 1380 PSNQNMTL+QNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNS+TRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQ PIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQG QMVQDLAWKNKP Sbjct: 593 PSNQNMTLRQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSVTRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQHPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGPQMVQDLAWKNKP 779 HSP 2 Score: 262.692 bits (670), Expect = 7.778e-74 Identity = 168/172 (97.67%), Postives = 168/172 (97.67%), Query Frame = 1 Query: 73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSSG 588 APNFGDAMGDRVPPTAWHPMSPQ MGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSVQGFNQSSSQIPTVGHQISPLQ PL SPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQL ASRPLVQPNVSSG Sbjct: 344 APNFGDAMGDRVPPTAWHPMSPQNMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSVQGFNQSSSQIPTVGHQISPLQNPLESPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLPASRPLVQPNVSSG 515
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A0B0N4S8_GOSAR (Flowering time control FCA-like protein OS=Gossypium arboreum GN=F383_12520 PE=4 SV=1) HSP 1 Score: 277.715 bits (709), Expect = 2.343e-81 Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1 Query: 820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGLQM 1350 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGLQM Sbjct: 371 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGLQM 547 HSP 2 Score: 169.088 bits (427), Expect = 5.792e-42 Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 Query: 328 QIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSSG 588 QIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSSG Sbjct: 207 QIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSSG 293
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A0D2RQ97_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G201900 PE=4 SV=1) HSP 1 Score: 264.618 bits (675), Expect = 1.373e-74 Identity = 170/173 (98.27%), Postives = 172/173 (99.42%), Query Frame = 1 Query: 820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQ 1338 PSNQNMTL+QNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNS+TRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQ PIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQ Sbjct: 585 PSNQNMTLRQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSVTRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQHPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQ 757 HSP 2 Score: 263.077 bits (671), Expect = 4.840e-74 Identity = 168/172 (97.67%), Postives = 168/172 (97.67%), Query Frame = 1 Query: 73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSSG 588 APNFGDAMGDRVPPTAWHPMSPQ MGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSVQGFNQSSSQIPTVGHQISPLQ PL SPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQL ASRPLVQPNVSSG Sbjct: 336 APNFGDAMGDRVPPTAWHPMSPQNMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSVQGFNQSSSQIPTVGHQISPLQNPLESPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLPASRPLVQPNVSSG 507
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A0D2TAV5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G201900 PE=4 SV=1) HSP 1 Score: 262.692 bits (670), Expect = 3.293e-74 Identity = 168/172 (97.67%), Postives = 168/172 (97.67%), Query Frame = 1 Query: 73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSSG 588 APNFGDAMGDRVPPTAWHPMSPQ MGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSVQGFNQSSSQIPTVGHQISPLQ PL SPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQL ASRPLVQPNVSSG Sbjct: 336 APNFGDAMGDRVPPTAWHPMSPQNMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPFGGPSDGSLPGLSVSSSSTSVQGFNQSSSQIPTVGHQISPLQNPLESPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVPPASHTPFSQALPSQHLAGLSGQLPASRPLVQPNVSSG 507 HSP 2 Score: 197.593 bits (501), Expect = 6.768e-51 Identity = 136/139 (97.84%), Postives = 138/139 (99.28%), Query Frame = 1 Query: 820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTA 1236 PSNQNMTL+QNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNS+TRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQ PIYPTA Sbjct: 585 PSNQNMTLRQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPVVECHWTEHTSPDGFKYYHNSVTRESKWEKPEELTLFEQQQQQQQKPPVQQPQTQLHAAQQASQQAQLQTQLQTQIRHPHQLQHPIYPTA 723
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A061EPK4_THECC (RNA binding,abscisic acid binding, putative isoform 1 OS=Theobroma cacao GN=TCM_021403 PE=4 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 2.897e-61 Identity = 151/196 (77.04%), Postives = 160/196 (81.63%), Query Frame = 1 Query: 820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDV----PSSASAAMKPVV---ECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGLQMVQDLAWKNKP 1380 PSNQNMTLQQNSQASK QWAGM PQA GS PA TP TDV + A+ M P V ECHWTEHTSPDGFKYYHNSLTRES+WEKPEEL LFEQQQQQQQKPPVQQPQTQ H +QQ Q QTQLQTQI HP QLQ P +P+AY ASGVRNQQ+TQELGYGQLPVAPSPN+P+RFQQGLQ VQDLAWKNKP Sbjct: 587 PSNQNMTLQQNSQASKQQWAGMTPQAAGSTPASTPSTDVPSSASAPAAPVMTPTVTPGECHWTEHTSPDGFKYYHNSLTRESRWEKPEELALFEQQQQQQQKPPVQQPQTQSHPPQQASQAQQVQFQTQLQTQIHHPLQLQLPFFPSAYSASGVRNQQNTQELGYGQLPVAPSPNNPTRFQQGLQTVQDLAWKNKP 782 HSP 2 Score: 188.734 bits (478), Expect = 6.338e-48 Identity = 131/172 (76.16%), Postives = 143/172 (83.14%), Query Frame = 1 Query: 73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVP-PASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSS 585 APNFGDAMGD VPP WHPMSPQ MGPT PGIRS+G+QLLPRS +LAIPLNPG PFGGP+DGSLPG +VSSSSTS QGFNQ S +PTVG QISPLQKPL SPQ LPPSFQLHP AP+SYSQ+Q HVGQLQVP A+ +PFSQALPSQH +SGQL ASRP +Q N SS Sbjct: 337 APNFGDAMGDNVPPNPWHPMSPQNMGPT--PGIRSLGSQLLPRSGELAIPLNPGGPFGGPTDGSLPGPAVSSSSTSQQGFNQPSPLVPTVGQQISPLQKPLQSPQGLPPSFQLHPLAPVSYSQSQAVHVGQLQVPLSATQSPFSQALPSQHF--VSGQLPASRPQIQQNASS 504
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A061EQ46_THECC (RNA binding,abscisic acid binding, putative isoform 3 OS=Theobroma cacao GN=TCM_021403 PE=4 SV=1) HSP 1 Score: 223.016 bits (567), Expect = 1.350e-59 Identity = 151/197 (76.65%), Postives = 160/197 (81.22%), Query Frame = 1 Query: 820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDV----PSSASAAMKPVV---ECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRF-QQGLQMVQDLAWKNKP 1380 PSNQNMTLQQNSQASK QWAGM PQA GS PA TP TDV + A+ M P V ECHWTEHTSPDGFKYYHNSLTRES+WEKPEEL LFEQQQQQQQKPPVQQPQTQ H +QQ Q QTQLQTQI HP QLQ P +P+AY ASGVRNQQ+TQELGYGQLPVAPSPN+P+RF QQGLQ VQDLAWKNKP Sbjct: 587 PSNQNMTLQQNSQASKQQWAGMTPQAAGSTPASTPSTDVPSSASAPAAPVMTPTVTPGECHWTEHTSPDGFKYYHNSLTRESRWEKPEELALFEQQQQQQQKPPVQQPQTQSHPPQQASQAQQVQFQTQLQTQIHHPLQLQLPFFPSAYSASGVRNQQNTQELGYGQLPVAPSPNNPTRFQQQGLQTVQDLAWKNKP 783 HSP 2 Score: 188.734 bits (478), Expect = 6.726e-48 Identity = 131/172 (76.16%), Postives = 143/172 (83.14%), Query Frame = 1 Query: 73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVP-PASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSS 585 APNFGDAMGD VPP WHPMSPQ MGPT PGIRS+G+QLLPRS +LAIPLNPG PFGGP+DGSLPG +VSSSSTS QGFNQ S +PTVG QISPLQKPL SPQ LPPSFQLHP AP+SYSQ+Q HVGQLQVP A+ +PFSQALPSQH +SGQL ASRP +Q N SS Sbjct: 337 APNFGDAMGDNVPPNPWHPMSPQNMGPT--PGIRSLGSQLLPRSGELAIPLNPGGPFGGPTDGSLPGPAVSSSSTSQQGFNQPSPLVPTVGQQISPLQKPLQSPQGLPPSFQLHPLAPVSYSQSQAVHVGQLQVPLSATQSPFSQALPSQHF--VSGQLPASRPQIQQNASS 504
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A061EQY6_THECC (RNA binding,abscisic acid binding, putative isoform 2 OS=Theobroma cacao GN=TCM_021403 PE=4 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 1.871e-52 Identity = 139/183 (75.96%), Postives = 148/183 (80.87%), Query Frame = 1 Query: 820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDV----PSSASAAMKPVV---ECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQG 1341 PSNQNMTLQQNSQASK QWAGM PQA GS PA TP TDV + A+ M P V ECHWTEHTSPDGFKYYHNSLTRES+WEKPEEL LFEQQQQQQQKPPVQQPQTQ H +QQ Q QTQLQTQI HP QLQ P +P+AY ASGVRNQQ+TQELGYGQLPVAPSPN+P+RFQQG Sbjct: 585 PSNQNMTLQQNSQASKQQWAGMTPQAAGSTPASTPSTDVPSSASAPAAPVMTPTVTPGECHWTEHTSPDGFKYYHNSLTRESRWEKPEELALFEQQQQQQQKPPVQQPQTQSHPPQQASQAQQVQFQTQLQTQIHHPLQLQLPFFPSAYSASGVRNQQNTQELGYGQLPVAPSPNNPTRFQQG 767 HSP 2 Score: 189.119 bits (479), Expect = 6.012e-48 Identity = 131/172 (76.16%), Postives = 143/172 (83.14%), Query Frame = 1 Query: 73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVP-PASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSS 585 APNFGDAMGD VPP WHPMSPQ MGPT PGIRS+G+QLLPRS +LAIPLNPG PFGGP+DGSLPG +VSSSSTS QGFNQ S +PTVG QISPLQKPL SPQ LPPSFQLHP AP+SYSQ+Q HVGQLQVP A+ +PFSQALPSQH +SGQL ASRP +Q N SS Sbjct: 335 APNFGDAMGDNVPPNPWHPMSPQNMGPT--PGIRSLGSQLLPRSGELAIPLNPGGPFGGPTDGSLPGPAVSSSSTSQQGFNQPSPLVPTVGQQISPLQKPLQSPQGLPPSFQLHPLAPVSYSQSQAVHVGQLQVPLSATQSPFSQALPSQHF--VSGQLPASRPQIQQNASS 502
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Match: A0A061EWZ0_THECC (RNA binding,abscisic acid binding, putative isoform 4 OS=Theobroma cacao GN=TCM_021403 PE=4 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 8.101e-48 Identity = 131/172 (76.16%), Postives = 143/172 (83.14%), Query Frame = 1 Query: 73 APNFGDAMGDRVPPTAWHPMSPQKMGPTSNPGIRSMGNQLLPRSADLAIPLNPGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIPTVGHQISPLQKPLGSPQNLPPSFQLHPQAPMSYSQTQTSHVGQLQVP-PASHTPFSQALPSQHLAGLSGQLSASRPLVQPNVSS 585 APNFGDAMGD VPP WHPMSPQ MGPT PGIRS+G+QLLPRS +LAIPLNPG PFGGP+DGSLPG +VSSSSTS QGFNQ S +PTVG QISPLQKPL SPQ LPPSFQLHP AP+SYSQ+Q HVGQLQVP A+ +PFSQALPSQH +SGQL ASRP +Q N SS Sbjct: 337 APNFGDAMGDNVPPNPWHPMSPQNMGPT--PGIRSLGSQLLPRSGELAIPLNPGGPFGGPTDGSLPGPAVSSSSTSQQGFNQPSPLVPTVGQQISPLQKPLQSPQGLPPSFQLHPLAPVSYSQSQAVHVGQLQVPLSATQSPFSQALPSQHF--VSGQLPASRPQIQQNASS 504 HSP 2 Score: 187.963 bits (476), Expect = 1.130e-47 Identity = 137/196 (69.90%), Postives = 145/196 (73.98%), Query Frame = 1 Query: 820 PSNQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDV----PSSASAAMKPVV---ECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFEXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXIRHPHQLQQPIYPTAYPASGVRNQQSTQELGYGQLPVAPSPNDPSRFQQGLQMVQDLAWKNKP 1380 PSNQNMTLQQNSQASK QWAGM PQA GS PA TP TDV + A+ M P V ECHWTEHTSPDGFKYYHNSLTRES+ PEEL LFEQQQQQQQKPPVQQPQTQ H +QQ Q QTQLQTQI HP QLQ P +P+A ELGYGQLPVAPSPN+P+RFQQGLQ VQDLAWKNKP Sbjct: 587 PSNQNMTLQQNSQASKQQWAGMTPQAAGSTPASTPSTDVPSSASAPAAPVMTPTVTPGECHWTEHTSPDGFKYYHNSLTRESRVRHPEELALFEQQQQQQQKPPVQQPQTQSHPPQQASQAQQVQFQTQLQTQIHHPLQLQLPFFPSA-------------ELGYGQLPVAPSPNNPTRFQQGLQTVQDLAWKNKP 769
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy Swiss-Prot
Match: FCA_ARATH (Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 1.040e-20 Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = 1 Query: 826 NQNMTLQQNSQASKHQWAGMMPQAVGSAPAKTPGTDVPSSASAAMKPV--VECHWTEHTSPDGFKYYHNSLTRESKWEKPEELTLFE 1080 NQN+ L QN +A K QWAG V S TP + V ++A A + V V+C WTEHTSPDGFKYY+N LT ESKWEKPEE+ +FE Sbjct: 543 NQNLPLSQNGRAGKQQWAGSAIPRVASTTGSTPVSYVQTAAPAVSQSVGSVKCTWTEHTSPDGFKYYYNGLTGESKWEKPEEMIVFE 629 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0021925 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0021925 ID=g.arboreum_cottongen_reftransV1_0021925; Name=g.arboreum_cottongen_reftransV1_0021925; organism=Gossypium arboreum; type=contig; length=1803bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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