g.arboreum_cottongen_reftransV1_0001923, g.arboreum_cottongen_reftransV1_0001923 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A0D2QZE7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G174000 PE=3 SV=1) HSP 1 Score: 435.647 bits (1119), Expect = 8.173e-152 Identity = 206/208 (99.04%), Postives = 208/208 (100.00%), Query Frame = -2 Query: 125 DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 748 DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYV+VR+HGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA Sbjct: 50 DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVVVRVHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 257
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A0D2S1C5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G174000 PE=3 SV=1) HSP 1 Score: 421.779 bits (1083), Expect = 2.350e-146 Identity = 202/208 (97.12%), Postives = 204/208 (98.08%), Query Frame = -2 Query: 125 DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 748 DTHTKTK NGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYV+VR+HGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA Sbjct: 50 DTHTKTK---RNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVVVRVHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 254
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A0B0NQK7_GOSAR (Putative tRNA (Cytidine(34)-2'-O)-methyltransferase OS=Gossypium arboreum GN=F383_16703 PE=3 SV=1) HSP 1 Score: 406.371 bits (1043), Expect = 2.303e-140 Identity = 199/208 (95.67%), Postives = 199/208 (95.67%), Query Frame = -2 Query: 125 DTHTKTKIETGNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 748 DTHTKTK NGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWP IHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA Sbjct: 50 DTHTKTK---RNGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWP-----IHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 249
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A061DXE7_THECC (AGAMOUS-like 26 isoform 1 OS=Theobroma cacao GN=TCM_005921 PE=3 SV=1) HSP 1 Score: 359.377 bits (921), Expect = 1.162e-121 Identity = 176/207 (85.02%), Postives = 184/207 (88.89%), Query Frame = -2 Query: 125 ETGNGNNSLP-------APDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 724 ETGNGN SLP + Q KLLQVVLVSPQIPGN GCIARTCAASAV +HLVGPLGFKVDDTKLKRAGLDYWPYV+VR+H SW EFQ+YFKQQEG KRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPD+LLDCKSETFGGGTIRIPMV+TYVRCLNLSVSVGIA+YEASRQLNYEQLQ PS N D EQS LTEDIFA Sbjct: 61 ETGNGN-SLPGGIGKAVSQLSQNKLLQVVLVSPQIPGNVGCIARTCAASAVGVHLVGPLGFKVDDTKLKRAGLDYWPYVVVRVHHSWTEFQDYFKQQEGKKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDILLDCKSETFGGGTIRIPMVDTYVRCLNLSVSVGIALYEASRQLNYEQLQGPSGNCSDTEQSFLTEDIFA 266
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A061DWH2_THECC (AGAMOUS-like 26 isoform 2 OS=Theobroma cacao GN=TCM_005921 PE=3 SV=1) HSP 1 Score: 331.643 bits (849), Expect = 9.023e-112 Identity = 156/174 (89.66%), Postives = 163/174 (93.68%), Query Frame = -2 Query: 125 QIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 646 QIPGN GCIARTCAASAV +HLVGPLGFKVDDTKLKRAGLDYWPYV+VR+H SW EFQ+YFKQQEG KRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPD+LLDCKSETFGGGTIRIPMV+TYVRCLNLSVSVGIA+YEASRQLNYEQLQ PS N D EQS LTEDIFA Sbjct: 21 QIPGNVGCIARTCAASAVGVHLVGPLGFKVDDTKLKRAGLDYWPYVVVRVHHSWTEFQDYFKQQEGKKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDILLDCKSETFGGGTIRIPMVDTYVRCLNLSVSVGIALYEASRQLNYEQLQGPSGNCSDTEQSFLTEDIFA 194
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: M5XKD6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010708mg PE=3 SV=1) HSP 1 Score: 333.183 bits (853), Expect = 1.201e-111 Identity = 153/186 (82.26%), Postives = 171/186 (91.94%), Query Frame = -2 Query: 125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 682 + K+LQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGFKVDD KLKRAGLDYWPYV+V++H SWAEFQ+YF+QQ+G+KRLLAFTKRGT+ HSDFSYR+GD+LIFGSET GLPP+VL DC SETFGGGTIRIPMVETYVRCLNLSVSVGIA+YEASRQL+YEQLQ P+ N D EQS ++EDIFA Sbjct: 54 RNKILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFKVDDAKLKRAGLDYWPYVVVKVHSSWAEFQDYFRQQDGEKRLLAFTKRGTSFHSDFSYRRGDFLIFGSETSGLPPEVLQDCNSETFGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLSYEQLQFPNENCIDHEQSFVSEDIFA 239
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: A0A067L4Q0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16733 PE=3 SV=1) HSP 1 Score: 332.798 bits (852), Expect = 3.086e-111 Identity = 160/207 (77.29%), Postives = 179/207 (86.47%), Query Frame = -2 Query: 125 ETGNGNNSLP-------APDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 724 E GNGN SLP + + KLLQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VDDTKLKRAGLDYWPYV+V++H SWAEF++YF+QQEGDKRLLAFTKRG A HS+FSYRKGDYL+FGSET GLPP+ LLDC++E+ GGGTIRIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQL+ PS D E+S +TEDIFA Sbjct: 57 ERGNGN-SLPHGIGEAVSEVSRNKLLQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDDTKLKRAGLDYWPYVVVKVHDSWAEFRDYFRQQEGDKRLLAFTKRGKATHSEFSYRKGDYLLFGSETRGLPPEALLDCENESIGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLKFPSETCIDNEKSFITEDIFA 262
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: B9HNL8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s06890g PE=3 SV=1) HSP 1 Score: 328.176 bits (840), Expect = 2.116e-109 Identity = 162/212 (76.42%), Postives = 178/212 (83.96%), Query Frame = -2 Query: 125 ETGNGN-NSLP--------APDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPS---TNSGDFEQSLLTEDIFA 724 ++G GN NSLP +KLLQVVLVSPQIPGN GCIARTCAA++V LHLVGPLGF+VDD KLKRAGLDYWPYV+V++H SWAEFQ+YF+QQEGDKRLLAFTKRGT HS+FSYRKGDYL+FGSET GLPP+ LLDCKSE FGGG IRIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQLQ PS N G EQS +TEDIFA Sbjct: 55 QSGRGNGNSLPDGVGKGVNEVSRNKKLLQVVLVSPQIPGNTGCIARTCAATSVGLHLVGPLGFQVDDAKLKRAGLDYWPYVVVKVHDSWAEFQDYFRQQEGDKRLLAFTKRGTTTHSEFSYRKGDYLVFGSETSGLPPEALLDCKSEMFGGGMIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSEDFVNGG--EQSFITEDIFA 264
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: B9RHG3_RICCO (23S rRNA methyltransferase, putative OS=Ricinus communis GN=RCOM_1525400 PE=3 SV=1) HSP 1 Score: 325.865 bits (834), Expect = 5.756e-109 Identity = 152/186 (81.72%), Postives = 167/186 (89.78%), Query Frame = -2 Query: 125 QQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 682 + KLLQVVLVSPQIPGN GCIARTCAASAV LHLVGPLGF+VD TKLKRAGLDYWPYV+V++H SW EFQ+YF+QQEGDKRLLAFTKRGTA HS+F YRKGDYLIFGSET GLPP+ L DCK+E FGGGTIRIPM+ETYVRCLNLSVSVGIA+YEASRQLNYEQL+ PS + D EQS + EDIFA Sbjct: 49 RNKLLQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGFQVDSTKLKRAGLDYWPYVVVKVHESWTEFQDYFRQQEGDKRLLAFTKRGTATHSEFLYRKGDYLIFGSETSGLPPEALQDCKNEPFGGGTIRIPMIETYVRCLNLSVSVGIALYEASRQLNYEQLKFPSESWTDNEQSFIIEDIFA 234
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Match: D7T2X8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0064g01270 PE=3 SV=1) HSP 1 Score: 326.25 bits (835), Expect = 6.984e-109 Identity = 155/197 (78.68%), Postives = 168/197 (85.28%), Query Frame = -2 Query: 125 NGNNSLPAPDPQQKLLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQVPSTNSGDFEQSLLTEDIFA 715 NG A +LLQVVLVSPQIPGN G IARTCAASAV LHL+ PLGF+VDD KLKRAGLDYWPYV+V++H SWAEF+ YF+QQEG+KRLLAFTKRGT IHSDFSYRKGD+LIFGSETCGLPP+ LLDCKSE GGGTIRIPMVETYVRCLNLSVSVGIA+YEASRQLNYEQLQ PS D +S LTEDIFA Sbjct: 54 NGAGERVAEISNNRLLQVVLVSPQIPGNTGTIARTCAASAVGLHLIEPLGFQVDDAKLKRAGLDYWPYVVVKVHDSWAEFREYFRQQEGEKRLLAFTKRGTNIHSDFSYRKGDWLIFGSETCGLPPEALLDCKSEALGGGTIRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQLQFPSDPPTDSSKSFLTEDIFA 250
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_SYNY3 (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0992 PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.948e-41 Identity = 77/157 (49.04%), Postives = 105/157 (66.88%), Query Frame = -2 Query: 203 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQL 673 ++++VLV+PQIP N G IARTCAA+ LHLVGPLGF++ D LKRAGLDYWPYV + H S EF +++ Q G+ LL F+ GT D++Y+ D+L+ GSET GL P ++ D ++ + IPM + VR LNL+ S IA++EA RQL Sbjct: 1 MVKLVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFELGDRYLKRAGLDYWPYVDLHYHNSCEEFITHWRGQGGN--LLGFSVTGTVNFWDYTYQSTDWLMMGSETDGL-PQMMRDLSTQ-----LLCIPMPHSEVRSLNLASSAAIALFEAGRQL 149
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_BACSU (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Bacillus subtilis (strain 168) GN=cspR PE=3 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 1.804e-37 Identity = 75/165 (45.45%), Postives = 93/165 (56.36%), Query Frame = -2 Query: 185 LQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGD---YLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQLQ 670 L VVL P+IP N G IARTCAA+ LHL+ PLGF DD LKRAGLDYW +V V H S E +K+ + TK G H+ F Y D + +FG ET GLP D++ + +R+PM E +VR LNLS + I VYEA RQ NY L+ Sbjct: 6 LHVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHDSLEELFEAYKK----GKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMDR-----CLRLPMTE-HVRSLNLSNTAAILVYEALRQQNYRDLK 160
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_ECOLI (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Escherichia coli (strain K12) GN=trmL PE=1 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.246e-36 Identity = 72/159 (45.28%), Postives = 93/159 (58.49%), Query Frame = -2 Query: 197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673 +L +VL P+IP N G I R CA + LH++ P+GF DD +L+RAGLDY + V H + F + E +RL A T +GT HS SY+ GDYL+FG ET GLP +L +E IRIPMV R +NLS +V + VYEA RQL Y Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRAFL----EAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_ECOL6 (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=trmL PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.246e-36 Identity = 72/159 (45.28%), Postives = 93/159 (58.49%), Query Frame = -2 Query: 197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673 +L +VL P+IP N G I R CA + LH++ P+GF DD +L+RAGLDY + V H + F + E +RL A T +GT HS SY+ GDYL+FG ET GLP +L +E IRIPMV R +NLS +V + VYEA RQL Y Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRHHDYRAFL----EAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQ----KIRIPMVPD-SRSMNLSNAVSVVVYEAWRQLGY 150
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_BURCM (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=trmL PE=3 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 1.832e-36 Identity = 68/160 (42.50%), Postives = 94/160 (58.75%), Query Frame = -2 Query: 194 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYE 673 + V+LV+P+IP N G + R CA + LHL+ PLGF +DD K++RAGLDY Y +R+H W F + R+ AFT RG+ D ++ GD+ +FGSET GLP DVL +E +R+PM R LNLS +V + V+EA RQ +E Sbjct: 1 MFNVILVAPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAEMRVHRDWDAFVA--AEAPDPARMFAFTTRGSGRFHDHAFVPGDWFVFGSETRGLPADVLERFPNEQ----RVRLPM-RPGNRSLNLSNTVAVVVFEAWRQAGFE 153
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_PHOAA (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77) GN=trmL PE=3 SV=2) HSP 1 Score: 132.109 bits (331), Expect = 2.783e-36 Identity = 73/160 (45.62%), Postives = 94/160 (58.75%), Query Frame = -2 Query: 197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEF-QNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673 +L +VL P+IP N G I R CA + LHL+ PLGF DD +L+RAGLDY + ++ H + F +N E RL A T +GT HS SY+ GDYL+FG ET GLP VL + + IRIPM+ R +NLS SV + V+EA RQL Y Sbjct: 1 MLNIVLFEPEIPPNTGNIIRLCANTGFQLHLIQPLGFTWDDKRLRRAGLDYHEFANIKQHHDYHSFLENEGVTGESFARLFALTTKGTPAHSAVSYQAGDYLMFGPETRGLPSYVLDNMPPQQ----KIRIPMLAD-SRSMNLSNSVAVVVFEAWRQLGY 155
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_HAEIN (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=trmL PE=1 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.043e-35 Identity = 69/160 (43.12%), Postives = 93/160 (58.13%), Query Frame = -2 Query: 194 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYE 673 +L +VL P+IP N G I R CA + LHL+ PLGF DD +L+R+GLDY + ++ H ++ F + E KRL A T +G HS ++ GDYL+FG ET G+P +L + E IRIPM R +NLS SV + VYEA RQL Y+ Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRHKTFEAFL----ESEKPKRLFALTTKGCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQ----KIRIPMTAN-SRSMNLSNSVAVTVYEAWRQLGYK 151
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_BURCH (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Burkholderia cenocepacia (strain HI2424) GN=trmL PE=3 SV=2) HSP 1 Score: 129.798 bits (325), Expect = 1.862e-35 Identity = 66/160 (41.25%), Postives = 94/160 (58.75%), Query Frame = -2 Query: 194 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYE 673 + VVLV+P+IP N G + R CA + LHL+ PLGF +DD +++RAGLDY Y +R+H W F + R+ AFT RG+ D ++ GD+ +FGSET GLP ++L +E +R+PM R LNLS +V + V+EA RQ +E Sbjct: 1 MFNVVLVAPEIPPNTGNVIRLCANTGAHLHLIEPLGFPLDDARMRRAGLDYHEYAQMRVHRDWDAFVA--AETPDPARMFAFTTRGSGRFHDHAFLSGDWFVFGSETRGLPAELLERFPNEQ----RVRLPMRPDN-RSLNLSNTVAVVVFEAWRQAGFE 153
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_SACD2 (tRNA (cytidine(34)-2'-O)-methyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=trmL PE=3 SV=2) HSP 1 Score: 128.642 bits (322), Expect = 4.817e-35 Identity = 68/159 (42.77%), Postives = 97/159 (61.01%), Query Frame = -2 Query: 197 LLQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSYRKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNY 673 + +VL P+IP N G I R CA + LHL+ PLGF++DD +L+RAGLDY + V H +W + F +Q+ +RL A + +GT H + S +GDYL+FG ET GLP ++L + TF +RIPM+ R +NLS + + VYEA RQL + Sbjct: 1 MFNIVLFEPEIPPNTGNIIRVCANTGCRLHLIEPLGFELDDKRLRRAGLDYGEWQSVVTHANW----DAFIKQQAPERLWALSTKGTKFHHEVSIGEGDYLVFGPETRGLPMEIL---EYITF-DNVLRIPMLPN-SRSMNLSNAASVMVYEAWRQLGF 150
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Match: TRML_GEOSE (Putative tRNA (cytidine(34)-2'-O)-methyltransferase OS=Geobacillus stearothermophilus PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.411e-34 Identity = 71/164 (43.29%), Postives = 94/164 (57.32%), Query Frame = -2 Query: 188 LQVVLVSPQIPGNAGCIARTCAASAVALHLVGPLGFKVDDTKLKRAGLDYWPYVIVRIHGSWAEFQNYFKQQEGDKRLLAFTKRGTAIHSDFSY---RKGDYLIFGSETCGLPPDVLLDCKSETFGGGTIRIPMVETYVRCLNLSVSVGIAVYEASRQLNYEQL 670 L VVL P+IP N G IARTCAA+ ALHL+ PLGF DD L+RAGLDYW +V + + S ++F QQ + TK G ++ + + K + IFG ET GLP ++L + + +RIPM E VR LNLS + I VYEA RQ ++ L Sbjct: 3 LHVVLFQPEIPANTGNIARTCAATNTALHLIRPLGFSTDDKMLRRAGLDYWEFVNIHYYDSL----DHFFQQNQNGDFYYITKFGKRYYTSYDFSDPSKEIFFIFGRETTGLPKELLAENEDR-----CLRIPMTEN-VRALNLSNTAAILVYEALRQQSFHGL 156 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0001923 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0001923 ID=g.arboreum_cottongen_reftransV1_0001923; Name=g.arboreum_cottongen_reftransV1_0001923; organism=Gossypium arboreum; type=contig; length=749bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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