g.arboreum_cottongen_reftransV1_0009114, g.arboreum_cottongen_reftransV1_0009114 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A0B0N7W1_GOSAR (Putative transporter MCH1 OS=Gossypium arboreum GN=F383_35950 PE=4 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 6.009e-43 Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = -3 Query: 1 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 444 AALYTLIANAINPDDETLYLFLNALVPLLASSLALVPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGLYLLLLNSLSSKASRALILLGGALILLLLPLCLPGIVCGRSWARRTVHTPAFCLEGPTFSSFDPDDFDQLHKELIGND Sbjct: 149 AALYTLIANAINPDDETLYLFLNALVPLLASSLALVPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGLYLLLLNSLSSKASRALILLGGALILLLLPLCLPGIVCGRSWARRTVHTPAFCLEGPTFSSFDPDDFDQLHKELIGND 296
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A0D2SJI4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G249600 PE=4 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 7.145e-42 Identity = 144/148 (97.30%), Postives = 145/148 (97.97%), Query Frame = -3 Query: 1 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 444 AALYTLIANAINPDDETLYLFLNALVPLLASSLALVPILRQPPLQLLSTDTTS DSF+FFVLNVLAVFTGLYLLLLNSLSSKASRA ILLGGALILLLLPLCLPGIVCGRSWARRTVHTPAFCLEGPTFSS DPDDFDQLHKELIGND Sbjct: 149 AALYTLIANAINPDDETLYLFLNALVPLLASSLALVPILRQPPLQLLSTDTTSWDSFVFFVLNVLAVFTGLYLLLLNSLSSKASRARILLGGALILLLLPLCLPGIVCGRSWARRTVHTPAFCLEGPTFSSLDPDDFDQLHKELIGND 296
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A061EZW7_THECC (Major facilitator superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_025727 PE=4 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 5.653e-29 Identity = 118/148 (79.73%), Postives = 130/148 (87.84%), Query Frame = -3 Query: 1 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 444 AALYTLIANAINPDD+TLYLFLNALVPLLASSLAL+PILRQPPLQLLSTD S+DSFIF +LNVLAV TGLYLLLLNSLSS+ASRA ILL GALILLLLPLCLPGIVCGR+WAR +HT +FCL+G T S D +LHKEL+G+D Sbjct: 149 AALYTLIANAINPDDDTLYLFLNALVPLLASSLALIPILRQPPLQLLSTDAVSQDSFIFIILNVLAVITGLYLLLLNSLSSEASRARILLVGALILLLLPLCLPGIVCGRNWARHNIHT-SFCLDGST-FSLVDPDDLELHKELLGSD 294
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A061EZ33_THECC (Major facilitator superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_025727 PE=4 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 7.418e-29 Identity = 118/148 (79.73%), Postives = 130/148 (87.84%), Query Frame = -3 Query: 1 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 444 AALYTLIANAINPDD+TLYLFLNALVPLLASSLAL+PILRQPPLQLLSTD S+DSFIF +LNVLAV TGLYLLLLNSLSS+ASRA ILL GALILLLLPLCLPGIVCGR+WAR +HT +FCL+G T S D +LHKEL+G+D Sbjct: 149 AALYTLIANAINPDDDTLYLFLNALVPLLASSLALIPILRQPPLQLLSTDAVSQDSFIFIILNVLAVITGLYLLLLNSLSSEASRARILLVGALILLLLPLCLPGIVCGRNWARHNIHT-SFCLDGST-FSLVDPDDLELHKELLGSD 294
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A061F0Y7_THECC (Major facilitator superfamily protein isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_025727 PE=4 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 9.598e-20 Identity = 104/134 (77.61%), Postives = 116/134 (86.57%), Query Frame = -3 Query: 1 DETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 402 D+TLYLFLNALVPLLASSLAL+PILRQPPLQLLSTD S+DSFIF +LNVLAV TGLYLLLLNSLSS+ASRA ILL GALILLLLPLCLPGIVCGR+WAR +HT +FCL+G T S D +LHKEL+G+D Sbjct: 1 DDTLYLFLNALVPLLASSLALIPILRQPPLQLLSTDAVSQDSFIFIILNVLAVITGLYLLLLNSLSSEASRARILLVGALILLLLPLCLPGIVCGRNWARHNIHT-SFCLDGST-FSLVDPDDLELHKELLGSD 132
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: M5X3K1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003313mg PE=4 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.437e-15 Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = -3 Query: 235 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTG 444 AALYTLIANAINP+D+T+YLFLNALVPL SS+AL+P+LRQPP+Q L D T RDS IF LN+LAV TG Sbjct: 149 AALYTLIANAINPNDDTIYLFLNALVPLFTSSVALIPVLRQPPIQSLPADATRRDSIIFLCLNILAVITG 218
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A0D2S5V4_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_004G254000 PE=4 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.373e-13 Identity = 100/148 (67.57%), Postives = 110/148 (74.32%), Query Frame = -3 Query: 1 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 444 AALYTLIANAINP D+TLYLFLNALVPLLAS LAL+PI+RQ PLQ LST T ++D FIF VLNVLAV TGLYLLLLNSLSS+A RA LL GALILL LPLCLPGIVC R+W RT ++ L P +LH ELI D Sbjct: 237 AALYTLIANAINPKDDTLYLFLNALVPLLASCLALIPIIRQRPLQ-LSTYTINQDPFIFIVLNVLAVITGLYLLLLNSLSSEALRARTLLLGALILLFLPLCLPGIVCDRNWGFRT-NSSLVDLSDP-----------ELHTELIEKD 371
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A0D2RAK7_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_004G254000 PE=4 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.736e-13 Identity = 100/148 (67.57%), Postives = 110/148 (74.32%), Query Frame = -3 Query: 1 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHTPAFCLEGPTXXXXXXXXXDQLHKELIGND 444 AALYTLIANAINP D+TLYLFLNALVPLLAS LAL+PI+RQ PLQ LST T ++D FIF VLNVLAV TGLYLLLLNSLSS+A RA LL GALILL LPLCLPGIVC R+W RT ++ L P +LH ELI D Sbjct: 237 AALYTLIANAINPKDDTLYLFLNALVPLLASCLALIPIIRQRPLQ-LSTYTINQDPFIFIVLNVLAVITGLYLLLLNSLSSEALRARTLLLGALILLFLPLCLPGIVCDRNWGFRT-NSSLVDLSDP-----------ELHTELIEKD 371
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A0B0NZB4_GOSAR (Putative transporter MCH1 OS=Gossypium arboreum GN=F383_23995 PE=4 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.850e-13 Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = -3 Query: 235 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTG 444 AALYTLIANAINP D+TLYLFLNALVPLLAS LAL+PI+RQ PLQ LST T ++D FIF VLNVLAV TG Sbjct: 27 AALYTLIANAINPKDDTLYLFLNALVPLLASCLALIPIIRQRPLQ-LSTYTINQDPFIFIVLNVLAVITG 95
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Match: A0A067KTW8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02622 PE=4 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.487e-13 Identity = 80/119 (67.23%), Postives = 94/119 (78.99%), Query Frame = -3 Query: 88 AALYTLIANAINPDDETLYLFLNXXXXXXXXXXXXXPILRQPPLQLLSTDTTSRDSFIFFVLNVLAVFTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVCGRSWARRTVHT 444 AA+YTLIANAI+PD ++YL LNA++PL S LAL P+L QPP Q L T+ RDSFIF +LN+LA+ TGLYLLLLNSLSS A A ILLGGA +LL LPLCLPGIVC R+WARR + T Sbjct: 100 AAIYTLIANAIDPDANSIYLLLNAVLPLFVSGLALFPVLNQPPPQQLPTEANRRDSFIFLILNILAIITGLYLLLLNSLSSVAWTAGILLGGAFLLLALPLCLPGIVCARNWARRIIDT 218 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0009114 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0009114 ID=g.arboreum_cottongen_reftransV1_0009114; Name=g.arboreum_cottongen_reftransV1_0009114; organism=Gossypium arboreum; type=contig; length=446bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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