g.arboreum_cottongen_reftransV1_0004644, g.arboreum_cottongen_reftransV1_0004644 (contig) Gossypium arboreum
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A0B0PLU1_GOSAR (Floral homeotic APETALA 2-like protein OS=Gossypium arboreum GN=F383_00249 PE=4 SV=1) HSP 1 Score: 342.043 bits (876), Expect = 6.286e-112 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 Query: 1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTPWQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPSTPHFYCRTER 567 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTPWQIQGPYGGTKEMSLFPSAASSGFSSSIITSPSAAAGQLRVPNATFLQHHFPPVIMNPSTPHFYCRTER Sbjct: 259 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTPWQIQGPYGGTKEMSLFPSAASSGFSSSIITSPSAAAGQLRVPNATFLQHHFPPVIMNPSTPHFYCRTER 447
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A0D2NSM9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G251500 PE=4 SV=1) HSP 1 Score: 325.479 bits (833), Expect = 4.395e-105 Identity = 182/189 (96.30%), Postives = 183/189 (96.83%), Query Frame = 1 Query: 1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTPWQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPSTPHFYCRTER 567 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQ YDGLPVASGARFENSA ATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDS PWQIQGPYGGTKEM LFPSAASSGFSSSIITSPSAAAGQLRVPNATFLQHHFPPVIMN +TPHFYCRTER Sbjct: 293 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQRGYDGLPVASGARFENSAPATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSPPWQIQGPYGGTKEMPLFPSAASSGFSSSIITSPSAAAGQLRVPNATFLQHHFPPVIMNSNTPHFYCRTER 481
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A061ESW7_THECC (AP2.7 isoform 2 OS=Theobroma cacao GN=TCM_022077 PE=4 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 1.210e-71 Identity = 142/191 (74.35%), Postives = 158/191 (82.72%), Query Frame = 1 Query: 1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTP---WQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFL-QHHFPPVIMNPSTPHFYCRT 561 AVTNFEPSTYEGELISES+NGD+N+ LDLNLGIAPP TS+ QKEN NS NF Q +DGLPV +GAR +NSA ATMRVQPSLGQA AFKH+ NWN ANPSFFPVYRERAIEKR+EVD P WQIQG YGG + LFP+AASSGFSSS ITSPSAAAGQL +PN TFL +HHFPP I NP+ HFYC++ Sbjct: 288 AVTNFEPSTYEGELISESDNGDRNQGLDLNLGIAPPYTSDPQKENNNSDNFAIQRGWDGLPVETGARIDNSAPATMRVQPSLGQAMAFKHLQNWNGANPSFFPVYRERAIEKRMEVDYAPNWAWQIQGLYGGANPVPLFPTAASSGFSSSTITSPSAAAGQLCIPNTTFLHRHHFPPAITNPNISHFYCQS 478
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A061ETL4_THECC (AP2.7 isoform 1 OS=Theobroma cacao GN=TCM_022077 PE=4 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 1.519e-71 Identity = 142/191 (74.35%), Postives = 158/191 (82.72%), Query Frame = 1 Query: 1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTP---WQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFL-QHHFPPVIMNPSTPHFYCRT 561 AVTNFEPSTYEGELISES+NGD+N+ LDLNLGIAPP TS+ QKEN NS NF Q +DGLPV +GAR +NSA ATMRVQPSLGQA AFKH+ NWN ANPSFFPVYRERAIEKR+EVD P WQIQG YGG + LFP+AASSGFSSS ITSPSAAAGQL +PN TFL +HHFPP I NP+ HFYC++ Sbjct: 303 AVTNFEPSTYEGELISESDNGDRNQGLDLNLGIAPPYTSDPQKENNNSDNFAIQRGWDGLPVETGARIDNSAPATMRVQPSLGQAMAFKHLQNWNGANPSFFPVYRERAIEKRMEVDYAPNWAWQIQGLYGGANPVPLFPTAASSGFSSSTITSPSAAAGQLCIPNTTFLHRHHFPPAITNPNISHFYCQS 493
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A0D2QBS2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G251500 PE=4 SV=1) HSP 1 Score: 233.032 bits (593), Expect = 9.297e-70 Identity = 144/189 (76.19%), Postives = 145/189 (76.72%), Query Frame = 1 Query: 1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTPWQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPSTPHFYCRTER 567 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQ YDGLPVASGA RERAIEKRIEVDS PWQIQGPYGGTKEM LFPSAASSGFSSSIITSPSAAAGQLRVPNATFLQHHFPPVIMN +TPHFYCRTER Sbjct: 293 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQRGYDGLPVASGA---------------------------------------RERAIEKRIEVDSPPWQIQGPYGGTKEMPLFPSAASSGFSSSIITSPSAAAGQLRVPNATFLQHHFPPVIMNSNTPHFYCRTER 442
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: A0A0D2QIU0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G251500 PE=4 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 4.103e-64 Identity = 103/106 (97.17%), Postives = 103/106 (97.17%), Query Frame = 1 Query: 1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYR 318 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQ YDGLPVASGARFENSA ATMRVQPSLGQATAFKHVPNWNVANPSFFPVYR Sbjct: 293 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQRGYDGLPVASGARFENSAPATMRVQPSLGQATAFKHVPNWNVANPSFFPVYR 398
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: B9SGS1_RICCO (Floral homeotic protein APETALA2, putative OS=Ricinus communis GN=RCOM_0819800 PE=4 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 1.422e-42 Identity = 105/191 (54.97%), Postives = 130/191 (68.06%), Query Frame = 1 Query: 1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTP---WQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPS-TPHFYCRT 561 AVTNFEPSTYEGE++SE N D N+ LDLNLGIAPP TS QK N +S FP+Q S+DG P G +S SAT++ + + F+H P W + +FFP+Y+ERA+EKR+EVDS P WQ QGP GG + F +AASSGF SS IT+PSAAAGQL+ PN+ L HHF P I NPS HFY ++ Sbjct: 277 AVTNFEPSTYEGEIMSEVNNADGNQNLDLNLGIAPPDTSGTQKINIETSGFPYQSSWDGRPNDRGQMILSSGSATLKDELPYDPSMPFEHPPLWGGLHSNFFPIYKERAMEKRMEVDSWPNWTWQAQGPCGGANPLPFFSTAASSGFGSSTITAPSAAAGQLQFPNSAILHHHFSPSITNPSNVSHFYYKS 467
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: B9MT78_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s13460g PE=4 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 4.017e-39 Identity = 107/191 (56.02%), Postives = 127/191 (66.49%), Query Frame = 1 Query: 1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTP-W--QIQGPYGGTKE-MXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPSTPHFYCRT 561 AVTNFEPSTYEGE++SE NGD N+ LDLNLGIAPP TS+ K N N F FQ +DGL + + NSASATM+ Q G H P W+ N FP+Y ERAIEKR+EVDS P W QIQGPYGG + LF +AASSGF+SS I +PSAAAGQL+ P++T L H FPP + FYCR+ Sbjct: 307 AVTNFEPSTYEGEILSEPNNGDGNQNLDLNLGIAPPDTSDGLKVNSNMGGFYFQSGWDGLSIDRAPKILNSASATMKNQQPNGPGMTSVHPPTWDGVNHHIFPIYEERAIEKRMEVDSFPNWTRQIQGPYGGGANPLPLFSTAASSGFASSAIMAPSAAAGQLQFPSSTIL-HRFPPFTNPSNISQFYCRS 496
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: M5VY07_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005230mg PE=4 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 8.763e-39 Identity = 98/190 (51.58%), Postives = 121/190 (63.68%), Query Frame = 1 Query: 1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTP---WQIQGPYGGTKEMXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPSTPHFYCRT 561 AVTNFEP++Y+G+++SE+ NG ++ LDLNLGIAPP S LQK N N S+FP Q D +P+ R EN A A MR Q S G A + P + N SFFP+ ERA EKR++V+S P WQ+QG GG M LF +AASSGF SS TSP AA QL PN T L HHF P + + P FYCR+ Sbjct: 282 AVTNFEPNSYDGQIMSEAHNGGSDKSLDLNLGIAPPLVSELQKNNSNLSSFPVQLGCDDIPIHMRTRNENCAPAPMRAQLSHGSMVASEEPPIMSNINSSFFPIQMERATEKRMDVNSFPNWAWQLQGLNGGATPMPLFSAAASSGFPSSTATSPPAAVTQLHFPNTTILHHHFSPSTVTNNIPGFYCRS 471
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Match: B9IIZ0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s08530g PE=4 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 8.137e-37 Identity = 104/192 (54.17%), Postives = 123/192 (64.06%), Query Frame = 1 Query: 1 AVTNFEPSTYEGELISESENGDQNRVLDLNLGIAPPCTSNLQKENENSSNFPFQHSYDGLPVASGARFENSASATMRVQPSLGQATAFKHVPNWNVANPSFFPVYRERAIEKRIEVDSTP-W--QIQGPYGGTKE-MXXXXXXXXXXXXXXXXXXXXXXXXQLRVPNATFLQHHFPPVIMNPS-TPHFYCRT 561 AVTNFEPS YEGE++SE +GD N+ LDL LGIAPP S+ K N N F F +DG+ +F NS SATM+ Q G H P W+ N FP+Y ERAIEKR+EVDS P W QIQGPYGG + LF +AASSGF+SS I +PSAAAGQL P++T L H F P I NPS FYCR+ Sbjct: 270 AVTNFEPSKYEGEILSEPSSGDGNQNLDLKLGIAPPDASDSLKVNSNMGGFYFHGGWDGVSTDRAPKFLNSVSATMKNQLPNGPGVTSVHPPMWDGINHRIFPIYEERAIEKRMEVDSFPNWTRQIQGPYGGGANPLPLFSTAASSGFASSAIMAPSAAAGQLHYPSSTILHHRFSPPITNPSNISQFYCRS 461 The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.arboreum_cottongen_reftransV1_0004644 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
Sequences
The
following sequences are available for this feature:
contig sequence >g.arboreum_cottongen_reftransV1_0004644 ID=g.arboreum_cottongen_reftransV1_0004644; Name=g.arboreum_cottongen_reftransV1_0004644; organism=Gossypium arboreum; type=contig; length=803bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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