g.arboreum_cottongen_reftransV1_0010449, g.arboreum_cottongen_reftransV1_0010449 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0010449
Unique Nameg.arboreum_cottongen_reftransV1_0010449
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr5chromosomeg.arboreum_cottongen_reftransV1_0010449:1..304 .
Chr5:54444230..54445249 -
Homology
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A0B0Q2G0_GOSAR (Autophagy-related protein 2 OS=Gossypium arboreum GN=F383_05424 PE=4 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 6.278e-60
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = -2 
Query:    1 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSCH 303
            SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSCH
Sbjct: 1512 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSCH 1612
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A0B0PYF9_GOSAR (Autophagy-related protein 2 OS=Gossypium arboreum GN=F383_05424 PE=4 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 8.743e-60
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = -2 
Query:    1 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSCH 303
            SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSCH
Sbjct: 1512 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSCH 1612
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A0D2SJ86_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G238500 PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.781e-56
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = -2 
Query:    7 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 303
            SVSKLSLSVH+FHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLP+RLQLHQSQLDFLISFFGEKSTSLDQTTS
Sbjct: 1584 SVSKLSLSVHDFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPMRLQLHQSQLDFLISFFGEKSTSLDQTTS 1682
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A0D2PUZ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G238500 PE=4 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.876e-56
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = -2 
Query:    7 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 303
            SVSKLSLSVH+FHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLP+RLQLHQSQLDFLISFFGEKSTSLDQTTS
Sbjct: 1584 SVSKLSLSVHDFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPMRLQLHQSQLDFLISFFGEKSTSLDQTTS 1682
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A0D2SJ91_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G238500 PE=4 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.964e-56
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = -2 
Query:    7 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 303
            SVSKLSLSVH+FHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLP+RLQLHQSQLDFLISFFGEKSTSLDQTTS
Sbjct: 1173 SVSKLSLSVHDFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPMRLQLHQSQLDFLISFFGEKSTSLDQTTS 1271
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A0D2RHA7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G238500 PE=4 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.102e-56
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = -2 
Query:    7 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 303
            SVSKLSLSVH+FHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLP+RLQLHQSQLDFLISFFGEKSTSLDQTTS
Sbjct: 1584 SVSKLSLSVHDFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPMRLQLHQSQLDFLISFFGEKSTSLDQTTS 1682
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A061E7L8_THECC (Autophagy 2, putative isoform 3 OS=Theobroma cacao GN=TCM_007042 PE=4 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.813e-50
Identity = 85/100 (85.00%), Postives = 93/100 (93.00%), Query Frame = -2 
Query:    4 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSC 303
            SVSKLSLSVH+FHLYD+ST+APWKLVL YYDSK HPRESSSKAFKLDLEAVRPDP TPLEEYRLRIA LP+ L LHQSQLDFLISFFGE+S+S+DQ+T C
Sbjct: 1059 SVSKLSLSVHDFHLYDESTNAPWKLVLGYYDSKGHPRESSSKAFKLDLEAVRPDPFTPLEEYRLRIAFLPMLLHLHQSQLDFLISFFGERSSSIDQSTGC 1158
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A0A061E1P1_THECC (Autophagy 2, putative isoform 1 OS=Theobroma cacao GN=TCM_007042 PE=4 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.008e-49
Identity = 85/100 (85.00%), Postives = 93/100 (93.00%), Query Frame = -2 
Query:    4 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSC 303
            SVSKLSLSVH+FHLYD+ST+APWKLVL YYDSK HPRESSSKAFKLDLEAVRPDP TPLEEYRLRIA LP+ L LHQSQLDFLISFFGE+S+S+DQ+T C
Sbjct: 1591 SVSKLSLSVHDFHLYDESTNAPWKLVLGYYDSKGHPRESSSKAFKLDLEAVRPDPFTPLEEYRLRIAFLPMLLHLHQSQLDFLISFFGERSSSIDQSTGC 1690
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: W9SML8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027544 PE=4 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.131e-45
Identity = 79/100 (79.00%), Postives = 88/100 (88.00%), Query Frame = -2 
Query:    1 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTSCH 300
            VSKLSLSV +FHLYD   DAPWKLVL YYDSK+HPR+SSSKAFKLDLEAVRPDP  PLEEYRL+IA LP+RL LHQSQLDFLISFFG KS+ +DQ++ CH
Sbjct: 1602 VSKLSLSVQDFHLYDMRRDAPWKLVLGYYDSKNHPRKSSSKAFKLDLEAVRPDPLIPLEEYRLQIAFLPMRLHLHQSQLDFLISFFGAKSSPVDQSSGCH 1701
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Match: A5ALG6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016602 PE=4 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.108e-45
Identity = 81/101 (80.20%), Postives = 88/101 (87.13%), Query Frame = -2 
Query:    1 VSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS-CH 300
            VSKLSL + +FHLYD S DAPWKLVL YY SKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIA+LPI L LHQ QLDFL+SFFG K+ S+DQ+ S CH
Sbjct: 1126 VSKLSLFIKDFHLYDNSRDAPWKLVLGYYHSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIAVLPILLHLHQGQLDFLVSFFGGKNQSVDQSPSHCH 1226
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_DEBHA (Autophagy-related protein 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=ATG2 PE=3 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 1.453e-7
Identity = 29/93 (31.18%), Postives = 45/93 (48.39%), Query Frame = -2 
Query:   19 SKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLD 297
            + + L + +  +YD   ++ W   L Y +S    RE  +   K  +  VRP+P     E  + I++LPIRL + Q  LDF I FF  K    +
Sbjct: 1406 NSIDLRIEDIDIYDNIPNSTWNKFLSYMNSLGE-REIGTSMLKASITNVRPNPELCSTEAMIDISILPIRLHVDQDALDFFIRFFDFKDKRFE 1497
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_MAGO7 (Autophagy-related protein 2 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=ATG2 PE=3 SV=2)

HSP 1 Score: 51.6026 bits (122), Expect = 3.853e-7
Identity = 30/97 (30.93%), Postives = 46/97 (47.42%), Query Frame = -2 
Query:    7 SKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFFGEKSTSLDQTTS 297
            S + + + +  +YD    + WK     YD    PRE       L +  VRP      EE  + + +LP+RL + Q  LDF+  FFG K  ++  T+S
Sbjct: 1701 SLIRVHIRDLDVYDHVPTSTWKR-FAMYDEDHGPREMGVPMVDLKVRIVRPVLDVTAEEIVMFVNVLPLRLHVDQDALDFITRFFGFKDDTIKTTSS 1796
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_ASPCL (Autophagy-related protein 2 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=atg2 PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 7.410e-7
Identity = 29/85 (34.12%), Postives = 40/85 (47.06%), Query Frame = -2 
Query:   43 SKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFF 297
            S L + V +  ++D    + WK    Y       RES +    L++  VRP P     E  L+  LLP+RL + Q  LDFL  FF
Sbjct: 1755 SSLDVRVRDLEIFDHVPTSTWKKFATYMQEAGE-RESGASMVHLEILTVRPVPELAASEIVLKATLLPLRLHVDQDALDFLCRFF 1838
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Match: ATG2_NEUCR (Autophagy-related protein 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=apg-2 PE=3 SV=2)

HSP 1 Score: 50.447 bits (119), Expect = 7.864e-7
Identity = 25/87 (28.74%), Postives = 45/87 (51.72%), Query Frame = -2 
Query:   43 SVSKLSLSVHEFHLYDKSTDAPWKLVLRYYDSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIALLPIRLQLHQSQLDFLISFF 303
            +++ + + +H+  ++D    + WK     YD     RE S     L++  V+P P  P  E  +++ +LP+RL + Q  LDF+  FF
Sbjct: 1654 TINTIDVRIHDLDVFDHIRTSTWKK-FAMYDIDAGERELSKHMVHLEVLNVKPVPDLPATELVVKVNILPLRLHVDQDALDFITRFF 1739
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0Q2G0_GOSAR6.278e-60100.00Autophagy-related protein 2 OS=Gossypium arboreum ... [more]
A0A0B0PYF9_GOSAR8.743e-60100.00Autophagy-related protein 2 OS=Gossypium arboreum ... [more]
A0A0D2SJ86_GOSRA1.781e-5697.98Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2PUZ6_GOSRA1.876e-5697.98Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2SJ91_GOSRA1.964e-5697.98Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2RHA7_GOSRA2.102e-5697.98Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A061E7L8_THECC9.813e-5085.00Autophagy 2, putative isoform 3 OS=Theobroma cacao... [more]
A0A061E1P1_THECC1.008e-4985.00Autophagy 2, putative isoform 1 OS=Theobroma cacao... [more]
W9SML8_9ROSA1.131e-4579.00Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A5ALG6_VITVI4.108e-4580.20Putative uncharacterized protein OS=Vitis vinifera... [more]

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BLAST of g.arboreum_cottongen_reftransV1_0010449 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ATG2_DEBHA1.453e-731.18Autophagy-related protein 2 OS=Debaryomyces hansen... [more]
ATG2_MAGO73.853e-730.93Autophagy-related protein 2 OS=Magnaporthe oryzae ... [more]
ATG2_ASPCL7.410e-734.12Autophagy-related protein 2 OS=Aspergillus clavatu... [more]
ATG2_NEUCR7.864e-728.74Autophagy-related protein 2 OS=Neurospora crassa (... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026849Autophagy-related protein 2PANTHERPTHR13190FAMILY NOT NAMEDcoord: 1..75
NoneNo IPR availablePANTHERPTHR13190:SF1AUTOPHAGY-SPECIFIC GENE 2, ISOFORM Acoord: 1..75

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0010449 ID=g.arboreum_cottongen_reftransV1_0010449; Name=g.arboreum_cottongen_reftransV1_0010449; organism=Gossypium arboreum; type=contig; length=304bp
ATGACAGCTAGTAGTCTGATCAAGTGAAGTGCTTTTTTCACCAAAAAAGC
TGATGAGAAAATCAAGTTGGCTTTGATGAAGCTGTAACCGGATAGGAAGG
AGGGCAATGCGTAACCGGTATTCCTCAAGAGGTGTAGAAGGATCTGGTCT
TACAGCCTCTAGGTCCAGTTTGAATGCCTTTGAAGAGGATTCCCTAGGAT
GATCTTTTGAATCGTAGTATCTTAGCACCAGTTTCCAAGGTGCATCTGTG
CTCTTGTCATAGAGATGAAACTCATGGACTGAAAGAGAAAGTTTGGACAC
AGAT
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR026849ATG2
Vocabulary: Biological Process
TermDefinition
GO:0006914autophagy