g.arboreum_cottongen_reftransV1_0018080, g.arboreum_cottongen_reftransV1_0018080 (contig) Gossypium arboreum

Overview
Nameg.arboreum_cottongen_reftransV1_0018080
Unique Nameg.arboreum_cottongen_reftransV1_0018080
Typecontig
OrganismGossypium arboreum (Tree cotton)
Sequence length569
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr1chromosomeg.arboreum_cottongen_reftransV1_0018080:1..569 .
Chr1:2444765..2445569 +
Homology
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BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: A0A067KCX6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07563 PE=4 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 2.508e-105
Identity = 161/190 (84.74%), Postives = 179/190 (94.21%), Query Frame = -2 
Query:    2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568
            LNLALPK+KS+ DAKSESE+IIKQTQAI R QGA+R +F+T Q+IE+++PMVEAVGW LLATFSVTMEEGEN+PRV LCMEGFKAGIHIT+VLGMDTMRYAFLTSLVRFTFLHAPK+MRSKNVEALRTLL L DSE DSLQDTWNAVLECVSRLEFIT+TP IAA+VMHGSNQISRDA++QSL+ELAGKP
Sbjct:  807 LNLALPKRKSSADAKSESEAIIKQTQAIFRKQGARRGIFHTVQQIEIIRPMVEAVGWPLLATFSVTMEEGENKPRVVLCMEGFKAGIHITHVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLALSDSETDSLQDTWNAVLECVSRLEFITSTPAIAATVMHGSNQISRDAILQSLRELAGKP 996
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BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: A0A0A0L3W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G126980 PE=4 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 5.127e-104
Identity = 161/190 (84.74%), Postives = 179/190 (94.21%), Query Frame = -2 
Query:    2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568
            LNLALP++KS+ +A+SESE+IIKQTQ I RNQGAKR VFYT+Q IELV+PMVEAVGW LLATFSVTMEEG+N+PRV LCMEGF+AGIHIT+VLGMDTMRYAFLTSLVRFTFLHAPK+MRSKNVEALRTLL LCD E +SLQDTWNAVLECVSRLEFIT+TP IAA+VM+GSNQISRDAVVQSL+ELAGKP
Sbjct:  795 LNLALPRRKSSTEAQSESEAIIKQTQVIFRNQGAKRGVFYTSQRIELVRPMVEAVGWPLLATFSVTMEEGDNKPRVVLCMEGFRAGIHITHVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLALCDLETESLQDTWNAVLECVSRLEFITSTPSIAATVMYGSNQISRDAVVQSLRELAGKP 984
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BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: B9RR10_RICCO (Guanine nucleotide-exchange, putative OS=Ricinus communis GN=RCOM_0708240 PE=4 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 6.641e-104
Identity = 159/190 (83.68%), Postives = 176/190 (92.63%), Query Frame = -2 
Query:    2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568
            LNL LPK+K + DAKSES +IIKQTQAI R QG +R +F+T Q++E+V+PMVEAVGW LLATFSVTMEEGEN+PRV LCMEGFKAGIHIT+VLGMDTMRYAFLTSLVRFTFLHAPK+MRSKNVEALRTLL LCDSE DSLQDTWNAVLECVSRLEFIT+TP IAA+VMHGSNQISRDAV+QSL+ELAGKP
Sbjct:  804 LNLGLPKRKLSTDAKSESAAIIKQTQAIFRKQGVRRGIFHTVQQVEIVRPMVEAVGWPLLATFSVTMEEGENKPRVVLCMEGFKAGIHITHVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLALCDSETDSLQDTWNAVLECVSRLEFITSTPSIAATVMHGSNQISRDAVLQSLRELAGKP 993
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BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: M0WUL9_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 1.610e-103
Identity = 151/190 (79.47%), Postives = 173/190 (91.05%), Query Frame = -2 
Query:    2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568
            LNLALP+ KSA D K+ESE IIKQTQA+ +NQG KR VF+ AQ++ELV+PM+EAVGW LLATFSVTMEEG+N+PRV LCMEGFKAGIH+T VLGM+TMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLL L D++ D+LQD WNAVLECVSRLE+IT++P +AA+VM GSNQISRD+VVQSLKELAGKP
Sbjct:  334 LNLALPRLKSASDTKAESEKIIKQTQAVFKNQGQKRGVFHVAQQVELVRPMLEAVGWPLLATFSVTMEEGDNKPRVVLCMEGFKAGIHLTRVLGMETMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLALADTDMDALQDAWNAVLECVSRLEYITSSPSMAATVMQGSNQISRDSVVQSLKELAGKP 523
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BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: V7CB72_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G126000g PE=4 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 4.129e-103
Identity = 160/190 (84.21%), Postives = 180/190 (94.74%), Query Frame = -2 
Query:    2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568
            LNLALPK+KS+ DAKSESE+IIK+TQAI RNQG KR VFYTAQ+IELV+PMVEAVGW LLATFSVTMEEG+N+PRV L MEGF+AGIHIT+VLGMDTMRYAFLTSLVRFTFLHAPK+MRSKNVEALRTLL LC+S+ ++LQDTWNAVLECVSRLEFIT+TP I+A+VMHGSNQIS+DAVVQSL+ELAGKP
Sbjct:  798 LNLALPKRKSSEDAKSESEAIIKKTQAIFRNQGVKRGVFYTAQQIELVRPMVEAVGWPLLATFSVTMEEGDNKPRVVLLMEGFRAGIHITFVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLVLCESDTNALQDTWNAVLECVSRLEFITSTPSISATVMHGSNQISKDAVVQSLRELAGKP 987
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BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: B9HCN1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s23350g PE=4 SV=2)

HSP 1 Score: 335.495 bits (859), Expect = 4.450e-103
Identity = 158/190 (83.16%), Postives = 177/190 (93.16%), Query Frame = -2 
Query:    2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568
            LNLALPK+KS+ DAKSE+E+IIKQTQAI R QGA+R VF+T Q+IE+++PMVEAVGW LL TFSVTMEEG+N+PRV LCMEGFKAGIHIT+VLGMDTMRYAFLTSLVRFTFLHAPK+MRSKNVEALRTLL LCDSE DSLQDTWNAVLECVSRLE+IT+TP IA +VM GSNQISRDAV+QSL+ELAGKP
Sbjct:  635 LNLALPKRKSSTDAKSENEAIIKQTQAIFRKQGARRGVFHTVQQIEIIRPMVEAVGWPLLVTFSVTMEEGDNKPRVVLCMEGFKAGIHITHVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLALCDSETDSLQDTWNAVLECVSRLEYITSTPSIAVTVMLGSNQISRDAVLQSLRELAGKP 824
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BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: V7CC95_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G126000g PE=4 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 4.805e-103
Identity = 160/190 (84.21%), Postives = 180/190 (94.74%), Query Frame = -2 
Query:    2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568
            LNLALPK+KS+ DAKSESE+IIK+TQAI RNQG KR VFYTAQ+IELV+PMVEAVGW LLATFSVTMEEG+N+PRV L MEGF+AGIHIT+VLGMDTMRYAFLTSLVRFTFLHAPK+MRSKNVEALRTLL LC+S+ ++LQDTWNAVLECVSRLEFIT+TP I+A+VMHGSNQIS+DAVVQSL+ELAGKP
Sbjct:  798 LNLALPKRKSSEDAKSESEAIIKKTQAIFRNQGVKRGVFYTAQQIELVRPMVEAVGWPLLATFSVTMEEGDNKPRVVLLMEGFRAGIHITFVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLVLCESDTNALQDTWNAVLECVSRLEFITSTPSISATVMHGSNQISKDAVVQSLRELAGKP 987
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BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: W5BAZ3_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 8.842e-103
Identity = 147/190 (77.37%), Postives = 170/190 (89.47%), Query Frame = -2 
Query:    2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568
            LNLALP+ KSA D K+ESE IIKQTQA+ +NQG KR VF+ AQ++ELV+PM+EAVGW LLATFSVTMEEG+N+PRV LCMEGFKAGIH+T VLGM+TMRYAFLTSLVRFTFLHAP++MRSKNVEALRTLL L D + D+LQD W AVLECVSRLE+IT+ P +AA+VM GSNQISRD+VVQSLKEL+GKP
Sbjct:  146 LNLALPRLKSASDTKAESEKIIKQTQAVFKNQGQKRGVFHVAQQVELVRPMLEAVGWPLLATFSVTMEEGDNKPRVVLCMEGFKAGIHLTRVLGMETMRYAFLTSLVRFTFLHAPREMRSKNVEALRTLLALADMDMDALQDAWTAVLECVSRLEYITSVPSMAATVMQGSNQISRDSVVQSLKELSGKP 335
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BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: A0A059CMB6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C00756 PE=4 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.612e-102
Identity = 157/190 (82.63%), Postives = 176/190 (92.63%), Query Frame = -2 
Query:    2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568
            LNLALPK KS+VD K++S +I+KQTQAI RNQG KR VFY++Q IE+ KPMVEAVGW LLATFSVTMEEG+N+PR+ LCMEGFKAGIHIT+VLGMDTMRYAFLTSLVR TFLHAPKDMRSKNVEALRTLL LCD+E DSLQDTWNAVLECVSRLE+IT+TP I+A+VMHGSNQISRDAV+QSL+ELAGKP
Sbjct:  938 LNLALPKGKSSVDPKNDSAAIVKQTQAIFRNQGVKRGVFYSSQRIEIAKPMVEAVGWPLLATFSVTMEEGDNKPRIILCMEGFKAGIHITHVLGMDTMRYAFLTSLVRCTFLHAPKDMRSKNVEALRTLLALCDTETDSLQDTWNAVLECVSRLEYITSTPSISATVMHGSNQISRDAVLQSLRELAGKP 1127
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BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Match: I1LYC1_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=2)

HSP 1 Score: 334.339 bits (856), Expect = 2.344e-102
Identity = 160/190 (84.21%), Postives = 178/190 (93.68%), Query Frame = -2 
Query:    2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568
            LNLALPK+KS+ DAKSESE+IIK+TQAI RN+G KR VFYTAQ+IELV+PMVEAVGW LLATFSVTMEEG+N+PRV L MEGFKAGIHIT+VLGMDTMRYAFLTSLVRFTFLHAPK+MRSKNVEALRTLL LCDS+ ++LQDTWNAVLECVSRLEFIT+TP I+ +VMHGSNQIS+DAVVQSLKELA KP
Sbjct:  799 LNLALPKRKSSGDAKSESEAIIKKTQAIFRNKGVKRGVFYTAQQIELVRPMVEAVGWPLLATFSVTMEEGDNKPRVVLLMEGFKAGIHITFVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRTLLVLCDSDMNALQDTWNAVLECVSRLEFITSTPSISVTVMHGSNQISKDAVVQSLKELAAKP 988
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG5_ARATH (Brefeldin A-inhibited guanine nucleotide-exchange protein 5 OS=Arabidopsis thaliana GN=BIG5 PE=1 SV=2)

HSP 1 Score: 324.324 bits (830), Expect = 1.091e-100
Identity = 149/190 (78.42%), Postives = 170/190 (89.47%), Query Frame = -2 
Query:    2 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR-VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFITTTPVIAASVMHGSNQISRDAVVQSLKELAGKP 568
            LNL LPK+ SA DAKSE+E I+++TQ I R  G KR VF+T +++++++PMVEAVGW LLA FSVTME G+N+PR+ LCMEGFKAGIHI YVLGMDTMRYAFLTSLVRFTFLHAPK+MRSKNVEALR LLGLCDSEPD+LQDTWNAVLECVSRLEFI +TP IAA+VMHGSNQISRD VVQSLKELAG+P
Sbjct:  789 LNLGLPKRISAADAKSETEDIVRKTQEIFRKHGVKRGVFHTVEQVDIIRPMVEAVGWPLLAAFSVTMEVGDNKPRILLCMEGFKAGIHIAYVLGMDTMRYAFLTSLVRFTFLHAPKEMRSKNVEALRILLGLCDSEPDTLQDTWNAVLECVSRLEFIISTPGIAATVMHGSNQISRDGVVQSLKELAGRP 978
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG3_ARATH (Brefeldin A-inhibited guanine nucleotide-exchange protein 3 OS=Arabidopsis thaliana GN=BIG3 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 4.488e-29
Identity = 56/158 (35.44%), Postives = 99/158 (62.66%), Query Frame = -2 
Query:  101 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR--VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFI 568
            LN+ +P++   ++ ++ S+ +I+  Q   + +  K   V+Y A ++ +++ MVE     +LA FSV +++ ++     LC+EGF   IH+T V+ + T R AF+TSL +FT LH+P D++ KN+EA++ ++ L + E + LQD W  +L CVSR E +
Sbjct:  817 LNIVVPRRGDDMNMET-SDDLIRHMQERFKEKARKSESVYYAASDVIILRFMVEVCWAPMLAAFSVPLDQSDDAVITTLCLEGFHHAIHVTSVMSLKTHRDAFVTSLAKFTSLHSPADIKQKNIEAIKAIVKLAEEEGNYLQDAWEHILTCVSRFEHL 973
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG2_ARATH (Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Arabidopsis thaliana GN=BIG2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.163e-28
Identity = 57/156 (36.54%), Postives = 96/156 (61.54%), Query Frame = -2 
Query:  107 LNLALPKQKSAVDAKSESESIIKQTQAIIRNQGAKR--VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLE 568
            LN+ + KQ     A++ S+ ++K  Q   + +  K    +Y A ++ +++ M+EA    +LA FSV +++ ++   + +C+EGF   IH T ++ M T R AF+TSL +FT LH+P D++ +N+EA++ +L L D E + LQD W  +L CVSR E
Sbjct:  826 LNIVIRKQWGDSYAET-SDDLMKHMQEQFKEKARKSESTYYAATDVVILRFMIEACWAPMLAAFSVPLDQSDDLIVINICLEGFHHAIHATSLMSMKTHRDAFVTSLAKFTSLHSPADIKQRNIEAIKAILRLADEEGNYLQDAWEHILTCVSRFE 980
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG1_ARATH (Brefeldin A-inhibited guanine nucleotide-exchange protein 1 OS=Arabidopsis thaliana GN=BIG1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.454e-25
Identity = 48/138 (34.78%), Postives = 85/138 (61.59%), Query Frame = -2 
Query:  101 IIKQTQAIIRNQGAKR--VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFI 508
            +IK  Q   R++  K    ++   ++ +++ MVE     +LA FSVT+++ ++R     C+ GF+  +H+T V+GM T R AF+TS+ +FT LH   DM+ KNV+A++ ++ +   + + LQD W  +L C+SR+E +
Sbjct:  767 LIKDIQEKFRSKSGKSESAYHVVTDVAILRFMVEVSWGPMLAAFSVTLDQSDDRLAAVECLRGFRYAVHVTAVMGMQTQRDAFVTSMAKFTNLHCAGDMKQKNVDAVKAIISIAIEDGNHLQDAWEHILTCLSRIEHL 904
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG4_ARATH (Brefeldin A-inhibited guanine nucleotide-exchange protein 4 OS=Arabidopsis thaliana GN=BIG4 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.587e-25
Identity = 45/133 (33.83%), Postives = 87/133 (65.41%), Query Frame = -2 
Query:  101 QTQAIIRNQGAKRVFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEFI 499
            Q Q   + + ++ V++T  +I +++ ++E     +LA FSVT+++ ++R   +LC++GF+  +H+T V+GM T R AF+TS+ +FT LH   DM+ KNV+A++ ++ +   + + L  +W  +L C+SR+E +
Sbjct:  795 QEQFQAKPEKSESVYHTVTDISILRFILEVSWGPMLAAFSVTIDQSDDRLATSLCLQGFRYAVHVTAVMGMQTQRDAFVTSMAKFTNLHCAADMKQKNVDAVKAIITIAIEDGNHLHGSWEHILTCLSRIEHL 927
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: SEC7A_SCHPO (Protein transport protein sec71 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec71 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.348e-19
Identity = 42/118 (35.59%), Postives = 72/118 (61.02%), Query Frame = -2 
Query:  107 VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLE 460
            ++YTA+  E V PM EAV   +LA FS  ++   +   + L ++GF+  +++ +   MD  R AF+ +L +FT L+   +++  N+ AL+TLL +  +  D L+D+W  VL C+S+LE
Sbjct:  958 IYYTARHFEHVCPMFEAVWMPILAAFSEPLQLSSDPALIQLSLDGFRLAMNVIFFFSMDLPRNAFMQTLTKFTHLNNTSELKWTNMHALKTLLEISLAHGDKLRDSWKDVLLCISQLE 1075
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG2_HUMAN (Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Homo sapiens GN=ARFGEF2 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 1.203e-17
Identity = 47/158 (29.75%), Postives = 91/158 (57.59%), Query Frame = -2 
Query:  104 NLALPKQKSAVDAKSESESIIKQTQAIIRN-QGAKRVFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPK---DMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEF 565
            N+A  KQ+  +    E E + K  +A++     AK  F +A  ++ V+PM + V   LLA +S+ ++  ++    +LC+EG +  I I  + GM   R A++ +L RF+ L A     +M+ KN++ ++TL+ +  ++ + L ++W+ +L+C+S+LE 
Sbjct:  845 NVASEKQRRLL-YNLEMEQMAKTAKALMEAVSHAKAPFTSATHLDHVRPMFKLVWTPLLAAYSIGLQNCDDTEVASLCLEGIRCAIRIACIFGMQLERDAYVQALARFSLLTASSSITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLEL 1001
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG2_RAT (Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Rattus norvegicus GN=Arfgef2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.489e-17
Identity = 46/158 (29.11%), Postives = 91/158 (57.59%), Query Frame = -2 
Query:  104 NLALPKQKSAVDAKSESESIIKQTQAIIRN-QGAKRVFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPK---DMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEF 565
            N+A  KQ+  +    E E + K  +A++     AK  F +A  ++ V+PM + V   LLA +S+ ++  ++    +LC+EG +  + I  + GM   R A++ +L RF+ L A     +M+ KN++ ++TL+ +  ++ + L ++W+ +L+C+S+LE 
Sbjct:  852 NVASEKQRRLL-YNVEMEQMAKTAKALMEAVSHAKAPFTSATHLDHVRPMFKLVWTPLLAAYSIGLQNCDDTEVASLCLEGIRCAVRIACIFGMQLERDAYVQALARFSLLTASSSITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLEL 1008
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: BIG2_MOUSE (Brefeldin A-inhibited guanine nucleotide-exchange protein 2 OS=Mus musculus GN=Arfgef2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.762e-17
Identity = 42/143 (29.37%), Postives = 84/143 (58.74%), Query Frame = -2 
Query:  104 ESESIIKQTQAIIRN-QGAKRVFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPK---DMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLEF 520
            E E + K  +A++     AK  F +A  ++ V+PM + V   LLA +S+ ++  ++    +LC+EG +  + I  + GM   R A++ +L RF+ L A     +M+ KN++ ++TL+ +  ++ + L ++W+ +L+C+S+LE 
Sbjct:  866 EMEQMAKTAKALMEAVSHAKAPFTSATHLDHVRPMFKLVWTPLLAAYSIGLQNCDDTEVASLCLEGIRCAVRIACIFGMQLERDAYVQALARFSLLTASSSITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLEL 1008
[Close]
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Match: SEC7B_SCHPO (Protein transport protein sec72 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec72 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.548e-16
Identity = 37/127 (29.13%), Postives = 75/127 (59.06%), Query Frame = -2 
Query:  107 RNQGAKR--VFYTAQEIELVKPMVEAVGWSLLATFSVTMEEGENRPRVALCMEGFKAGIHITYVLGMDTMRYAFLTSLVRFTFLHAPKDMRSKNVEALRTLLGLCDSEPDSLQDTWNAVLECVSRLE 481
            +  G+++  V+Y A   E + PM+EA    +LA  S  ++  +    + +C++GF+  + I  +  +D +R AF+ +L  FT LH+  +++ +N   ++TLL +  +E ++L+D+W  +L  +S+LE
Sbjct:  952 QKHGSQKTNVYYNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIACLFDLDLIRDAFIKTLTNFTNLHSTSEIKLRNTMVIKTLLRIASTEGNNLKDSWKDILTIISQLE 1078
The following BLAST results are available for this feature:
BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy TrEMBL
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067KCX6_JATCU2.508e-10584.74Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A0A0L3W2_CUCSA5.127e-10484.74Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
B9RR10_RICCO6.641e-10483.68Guanine nucleotide-exchange, putative OS=Ricinus c... [more]
M0WUL9_HORVD1.610e-10379.47Uncharacterized protein OS=Hordeum vulgare var. di... [more]
V7CB72_PHAVU4.129e-10384.21Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
B9HCN1_POPTR4.450e-10383.16Uncharacterized protein OS=Populus trichocarpa GN=... [more]
V7CC95_PHAVU4.805e-10384.21Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
W5BAZ3_WHEAT8.842e-10377.37Uncharacterized protein OS=Triticum aestivum PE=4 ... [more]
A0A059CMB6_EUCGR1.612e-10282.63Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
I1LYC1_SOYBN2.344e-10284.21Uncharacterized protein OS=Glycine max PE=4 SV=2[more]

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BLAST of g.arboreum_cottongen_reftransV1_0018080 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-15 (Homology Analysis for Gossypium arboreum CottonGen RefTrans V1 vs SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
BIG5_ARATH1.091e-10078.42Brefeldin A-inhibited guanine nucleotide-exchange ... [more]
BIG3_ARATH4.488e-2935.44Brefeldin A-inhibited guanine nucleotide-exchange ... [more]
BIG2_ARATH5.163e-2836.54Brefeldin A-inhibited guanine nucleotide-exchange ... [more]
BIG1_ARATH2.454e-2534.78Brefeldin A-inhibited guanine nucleotide-exchange ... [more]
BIG4_ARATH8.587e-2533.83Brefeldin A-inhibited guanine nucleotide-exchange ... [more]
SEC7A_SCHPO3.348e-1935.59Protein transport protein sec71 OS=Schizosaccharom... [more]
BIG2_HUMAN1.203e-1729.75Brefeldin A-inhibited guanine nucleotide-exchange ... [more]
BIG2_RAT1.489e-1729.11Brefeldin A-inhibited guanine nucleotide-exchange ... [more]
BIG2_MOUSE2.762e-1729.37Brefeldin A-inhibited guanine nucleotide-exchange ... [more]
SEC7B_SCHPO1.548e-1629.13Protein transport protein sec72 OS=Schizosaccharom... [more]

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InterPro
Analysis Name: InterProScan analysis for Gossypium arboreum CottonGen RefTrans V1
Date Performed: 2016-11-14
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10663:SF189SH3 DOMAIN-CONTAINING PROTEINcoord: 10..56
coord: 138..187
NoneNo IPR availablePANTHERPTHR10663GUANYL-NUCLEOTIDE EXCHANGE FACTORcoord: 10..56
coord: 138..187

Sequences
The following sequences are available for this feature:

contig sequence

>g.arboreum_cottongen_reftransV1_0018080 ID=g.arboreum_cottongen_reftransV1_0018080; Name=g.arboreum_cottongen_reftransV1_0018080; organism=Gossypium arboreum; type=contig; length=569bp
CAGGTTTCCCAGCCAACTCTTTCAGTGACTGCACAACAGCATCCCTGGAG
ATCTGATTTGATCCATGCATGACACTTGCAGCAATAACAGGAGTTGTTGT
TATAAATTCAAGCCGAGAAACACATTCAAGAACAGCATTCCATGTGTCTT
GAAGAGAATCTGGTTCTGAGTCACATAAACCCAATAGAGTCCGCAATGCT
TCCACATTTTTACTACGCATATCCTTTGGGGCATGCAAGAAAGTAAACCT
GACTAGAGATGTTAAAAAGGCATAGCGCATTGTATCCATTCCGAGGACAT
ATGTGATATGTATCCCAGCTTTAAATCCTTCCATACAAAGAGCAACCCTC
GGCCTATTTTCACCTTCCTCCATTGTAACAGAGAAGGTAGCCAGCAATGA
CCATCCTACAGCTTCAACCATGGGTTTAACAAGTTCAATCTCTTGTGCAG
TGTAAAAAACTCTTTTTGCTCCTTGGTTTCGGATGATAGCCTGTGTCTGC
TTAATTATTGATTCACTTTCAGACTTAGCATCAACTGCTGATTTTTGTTT
AGGTAGAGCCAGATTAAGG
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