CSIRO_D5chr07_1854851 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCSIRO_D5chr07_1854851
AliasChr07_1854851
Chr07_1854850
dbSNP IDN/A
TypeSNP
SNP AllelesT/A
5' Flanking SequenceAGGGGATAGCCGTAGGTCGTGCTGTGGATTTGGCCATGTTTGAAGGGTATGGTCAGCTTA TAGATGAACTGGAGGAGATGTTTGATATTAAGGGAGAGCT
3' Flanking SequenceCGCCCTAGGAATAAGTGGGAGATTGTCTACACTGATGATGAAGGTGATATGATGCTTGTA GGCGATGATCCATGGCCGTAAGTTACCTGATAATGCCTTG
SpeciesGossypium hirsutum
GermplasmNamcala
Sicala 40
Sicot 81
Sicala V-2
Sicot 71
Sicala 3-2
Lu Mian 14
Deltapine 90
Coker 315
Tamcot SP37
Delta Opal
Sicot 70
Sicot 189
Siokra 1-4
Riverina Paplar
Deltapine 16
MCU-5 (PI 694627)
Source TypeRNA-seq
Publication[view all]
ContactZhu, Qian-Hao
Wilson, Iain
CommentData obtained 2014. SNP location is based on D5 JGI 221 position
Data obtained 2014. SNP location is based on D5 JGI 221 position. In the published map, the D5-pos in the name was 1 bp diff from its exactness.
Contact
NameDetails
Zhu, Qian-Hao
First name:Qian-Hao
Last name:Zhu
Title:Research Scientist
Institution:CSIRO
Address:CSIRO Plant Industry, GPO Box 1600, Canberra, ACT 2601,
Country:Australia
Email:Qianhao.Zhu@csiro.au
Phone:61 2 62464903
Last update:24-Aug-2014
Wilson, Iain
Description:SNPs; Disease resistance
First name:Iain
Last name:Wilson
Title:Senior Scientist
Institution:CSIRO
Address:Black Mountain Laboratories Clunies Ross Street, Black Mountain, ACT 2601
Country:Australia
Email:iain.wilson@csiro.au
Phone:+61 (0)2 62465211
Last update:28-Feb-2010
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018225.1chromosomeCM018225.1:1922806..1923006 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:63866778..63866978 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:2124264..2124464 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:40485726..40485926 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:2021092..2021292 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:2046359..2046559 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:2010148..2010348 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:2037439..2037639 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:2051531..2051731 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:1971169..1971369 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:1990266..1990466 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:1889596..1889796 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:2000102..2000302 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:1964834..1965034 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:2020601..2020801 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:61354271..61354471 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:1881722..1881922 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:1777694..1777894 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr07chromosomeChr07:2039501..2039701 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Germplasm
Stock NameType
Namcalaaccession
Sicala 40accession
Sicot 81accession
Sicala V-2accession
Sicot 71accession
Sicala 3-2accession
Lu Mian 14accession
Deltapine 90accession
Coker 315accession
Tamcot SP37accession
Delta Opalaccession
Sicot 70accession
Sicot 189accession
Siokra 1-4accession
Riverina Paplaraccession
Deltapine 16accession
MCU-5 (PI 694627)accession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1MCU-5 x Siokra 1-4, RIL (2015 SNP)AD_ch11_At.11N/A50.12Chr07_1854850View
Sequence
>CSIRO_D5chr07_1854851 ID=CSIRO_D5chr07_1854851; Name=CSIRO_D5chr07_1854851; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
AGGGGATAGCCGTAGGTCGTGCTGTGGATTTGGCCATGTTTGAAGGGTAT
GGTCAGCTTATAGATGAACTGGAGGAGATGTTTGATATTAAGGGAGAGCT
[T/A]CGCCCTAGGAATAAGTGGGAGATTGTCTACACTGATGATGAAGGT
GATATGATGCTTGTAGGCGATGATCCATGGCCGTAAGTTACCTGATAATG
CCTTG