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Marker Overview
| Name | CSIRO_D5chr03_40887809 |
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| Alias | Chr03_40887809
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| dbSNP ID | N/A |
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| SNP Array ID | | TAMU_CottonSNP63K: | i18575Gh |
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| Type | SNP |
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| SNP Alleles | A/C |
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| 5' Flanking Sequence | GTGTGACATACCTTAATCCTAAGTAGATGACGGACTATGTATGCATGACTAATATACTTT
GATGTAAATGAAAACCTAAGTTCAAATAGATAAGGAATCA |
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| 3' Flanking Sequence | AAGTTGGTACGTTGGGTTTACTTCTGCAATATATAGCATCATTCCACAATGTTGGAATTC
ATAGTCCAATAAAGGGTAAATGATACTCTCTCATCGGCGT |
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| Species | Gossypium hirsutum |
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| Germplasm | Siokra 1-4
MCU-5 (PI 694627)
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| Source Type | restriction-site associated DNA
RNA-seq and restriction-site associated DNA |
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| Restriction Enzyme | EcoRI; ApekI; SbfI |
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| Publication | [view all] |
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| Contact | Zhu, Qian-Hao
Wilson, Iain
Stelly, David M.
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| Comment | Data obtained 2014. SNP location is based on D5 JGI 221 position |
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Alignments
The following features are aligned
Publications
| Year | Publication |
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| 2014 | Zhu QH, Spriggs A, Taylor JM, Llewellyn D, Wilson I. Transcriptome and Complexity-Reduced-DNA Based Identification of Intraspecies Single Nucleotide Polymorphisms in the Polyploid Gossypium hirsutum L. G3 (Bethesda, Md.). 2014 Aug 7. |
| 2015 | Hulse-Kemp AM, Lemm J, Plieske J, Ashrafi H, Buyyarapu R, Fang DD, Frelichowski J, Giband M, Hague S, Hinze LL, Kochan KJ, Riggs PK, Scheffler JA, Udall JA, Ulloa M, Wang SS, Zhu QH, Bag SK, Bhardwaj A, Burke JJ, Byers RL, Claverie M, Gore MA, Harker DB, Islam MS, Jenkins JN, Jones DC, Lacape JM, Llewellyn DJ, Percy RG, Pepper AE, Poland JA, Mohan Rai K, Sawant SV, Kumar Singh S, Spriggs A, Taylor JM, Wang F, Yourstone SM, Zheng X, Lawley CT, Ganal MW, Van Deynze A, Wilson IW, Stelly DM. Development of a 63K SNP Array for Cotton and High-Density Mapping of Intra- and Inter-Specific Populations of Gossypium spp. G3 (Bethesda, Md.). 2015 Apr 22. |
Sequence
>CSIRO_D5chr03_40887809 ID=CSIRO_D5chr03_40887809; Name=CSIRO_D5chr03_40887809; organism=Gossypium hirsutum; type=genetic_marker; length=205bp
GTGTGACATACCTTAATCCTAAGTAGATGACGGACTATGTATGCATGACT
AATATACTTTGATGTAAATGAAAACCTAAGTTCAAATAGATAAGGAATCA
[A/C]AAGTTGGTACGTTGGGTTTACTTCTGCAATATATAGCATCATTCC
ACAATGTTGGAATTCATAGTCCAATAAAGGGTAAATGATACTCTCTCATC
GGCGT
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